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Accession: PRJNA176378 ID: 176378

Evolution of the human proteome: Completing the Chordate Nodes

The overarching goal of this proposal is to assemble comparative genomic data to enable stepwise reconstruction of the evolution of the human proteome. This involves tracing every human gene back to its progenitor genes or modules, at each stage of its ancestry, from mammals to the first multicellular animals. These data will then enable resolution of a fundamental question: how has the evolution and deployment of new proteins, as well as expansion of protein families, contributed to each evolutionary step in human ancestry?
AccessionPRJNA176378
TypeUmbrella project (Subtype:Funding initiative)
SubmissionRegistration date: 1-Oct-2012
NHGRI
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)605916
WGS master4
TSA master1
Transcript199027
SRA Experiments150
Protein Sequences91289
Publications
PubMed10
PMC7
Other datasets
BioSample41
Assembly4
SRA Data Details
ParameterValue
Data volume, Gbases1,573
Data volume, Tbytes1.17
This project encompasses the following 9 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

3
3
2
8
BioProject
accession
Assembly
level
OrganismTitle
PRJNA177958 ScaffoldsApalone spiniferaApalone spinifera Genome sequencing and assembly (WUGSC)
PRJNA78657 ChromosomesChrysemys picta belliiChrysemys picta bellii Genome sequencing and assembly (Painted turtle genome sequencing...)
PRJNA210179 ChromosomesChrysemys picta belliiChrysemys picta bellii RefSeq Genome (NCBI)
PRJNA56111 ScaffoldsLatimeria chalumnaeLatimeria chalumnae strain:Wild caught Genome sequencing and assembly (Broad Institute)
PRJNA219830 ScaffoldsLatimeria chalumnaeLatimeria chalumnae strain:Wild caught | isolate:SAIAB 97564 RefSeq Genome (NCBI)
List all 8 'Genome sequencing' projects...
Transcriptome or Gene expression1
BioProject
accession
OrganismTitle
PRJNA77699Latimeria chalumnaeLatimeria chalumnae Transcriptome or Gene expression (Broad Institute)

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