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Accession: PRJNA208232 ID: 208232

SEQC Project

This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series
AccessionPRJNA208232; GEO: GSE47792
TypeUmbrella project
Publications (total 6)
  • Li D et al., "Impact of Sequencing Depth and Library Preparation on Toxicological Interpretation of RNA-Seq Data in a "Three-Sample" Scenario.", Chem Res Toxicol, 2021 Feb 15;34(2):529-540
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SubmissionRegistration date: 10-Jun-2013
Center for Pharmacogenomics, School of Life Sciences, Fudan Univresity
RelevanceSuperseries
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3344
Publications
PubMed11
PMC10
Other datasets
BioSample4340
GEO DataSets11
GEO Data Details
ParameterValue
Data volume, Spots25627071
Data volume, Processed Mbytes296
Data volume, Supplementary Mbytes4001
SRA Data Details
ParameterValue
Data volume, Gbases5,158
Data volume, Tbytes3.49
SEQC Project encompasses the following 10 sub-projects:
Project TypeNumber of Projects
Transcriptome or Gene expression10
BioProject
accession
NameTitle
PRJNA208369A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortiumA comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium (Center for Pharmacogenomics,...)
PRJNA208822Homo sapiensMAQC-III/SEQC Main Study ABCD titration experiment, ERCC spike-in profiles and gene-level estimates for a selected test set (Chair of Bioinformatics,...)
PRJNA214798Homo sapiensRNA-Seq reveals an unprecedented complexity of the neuroblastoma transcriptome and is suitable for clinical endpoint prediction [microarray] (Systems Toxicology, NCTR/FDA)
PRJNA214797Homo sapiensRNA-Seq reveals an unprecedented complexity of the neuroblastoma transcriptome and is suitable for clinical endpoint prediction [RNA-Seq] (Center for Pharmacogenomics,...)
PRJNA243413Homo sapiensA comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium (Center for Pharmacogenomics,...)
List all 10 'Transcriptome or Gene expression' projects...

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