A collection of 16S rRNA gene amplicon sequences from patients with colorectal cancer, and technical controls. Samples come from stool, mucosa, tissue biopsies and tumor biopsies.
| Accession | PRJNA445346 |
| Data Type | Targeted Locus (Loci) |
| Scope | Environment |
| Organism | human metagenome[Taxonomy ID: 646099] unclassified sequences; metagenomes; organismal metagenomes; human metagenome |
| Publications | - Hale VL et al., "Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers.", Genome Med, 2018 Oct 31;10(1):78
- Hale VL et al., "Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.", Methods, 2018 Oct 1;149:59-68
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| Grants | - "Mayo Clinic Metabolomics Resource Core" (Grant ID U24 DK100469 , National Institutes of Health)
- "Mayo Center for Cell Signaling in Gastroenterology" (Grant ID P30 DK084567 , National Institutes of Health)
- "Time lapse to cancer: defining transition from polyp to colorectal cancer (PQ14)" (Grant ID R01 CA170357, National Cancer Institute)
- "Microbial Metabolic Toxicity Drives Colon Cancer" (Grant ID R01 CA179243, National Cancer Institute)
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| Submission | Registration date: 23-Mar-2018
Mayo Clinic |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 1420 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 1420 |