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Accession: PRJNA496478 ID: 496478

Acyrthosiphon pisum isolate:AL4f (pea aphid)

Acyrthosiphon pisum Genome sequencing and assembly using HiC and Chicago

See Genome Information for Acyrthosiphon pisum
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48 additional projects are related by organism.
The pea aphid genome is highly repetitive. Here we use proximity ligation of DNA in chromatin (HiC and Chicago library) to improve the current pea aphid genome assembly.
AccessionPRJNA496478
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismAcyrthosiphon pisum[Taxonomy ID: 7029]
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon; Acyrthosiphon pisum
PublicationsLi Y et al., "Gene Family Evolution in the Pea Aphid Based on Chromosome-Level Genome Assembly.", Mol Biol Evol, 2019 Oct 1;36(10):2143-2156
Grants
  • "Elucidating the coevolutionary dynamics in an obligate insect symbiosis" (Grant ID 1551092, National Science Foundation)
SubmissionRegistration date: 17-May-2019
- The University of Texas at Austin
- Nancy A. Moran
RelevanceModel Organism
Locus Tag PrefixD9768
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5
WGS master1
SRA Experiments9
Publications
PubMed1
PMC1
Other datasets
BioSample10
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_005508785.2ChromosomeSDIB00000000
4
SAMN10253041
Acyrthosiphon pisum
SRA Data Details
ParameterValue
Data volume, Gbases316
Data volume, Tbytes0.12
Related RefSeq Project
PRJNA547584 : Acyrthosiphon pisum isolate:AL4f RefSeq Genome sequencing and assembly

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