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Accession: PRJNA646947 ID: 646947

Comparative genomics of mycobacteria

Genome sequencing (resequencing), assembly, and phylogenetic analysis of rapid and slow-growing mycobacteria to understand the evolution of the genus Mycobacterium.
AccessionPRJNA646947
Data TypeGenome sequencing
ScopeMultispecies
PublicationsBehra PRK et al., "Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA.", BMC Genomics, 2022 Oct 15;23(1):704
SubmissionRegistration date: 17-Jul-2020
Uppsala University
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)113
WGS master110
Genomic DNA3
Protein Sequences16058
Publications
PubMed1
PMC1
Other datasets
BioSample116
Assembly113
Assembly details:
Assembly levelNumber of Assemblies
3
82
28
113
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_025823205.1ContigJACKVH000000000
SAMN15568921
CCUG 55640
GCA_025822405.1ScaffoldJACKTS000000000
SAMN15568962
DSM 45057
GCA_025822765.1ScaffoldJACKUK000000000
SAMN15568944
CCUG 50398
GCA_025821915.1ScaffoldJACKSV000000000
SAMN15568985
DSM 44277
GCA_025822125.1ScaffoldJACKTG000000000
SAMN15568974
DSM 45439
GCA_025821955.1ScaffoldJACKSX000000000
SAMN15568983
DSM 45746
GCA_025822465.1ContigJACKTX000000000
SAMN15568957
DSM 44624
GCA_025821765.1ScaffoldJACKSP000000000
SAMN15568991
DSM 44136
GCA_025822925.1ScaffoldJACKUP000000000
SAMN15568939
DSM 43922
GCA_025823305.1ScaffoldJACKVN000000000
SAMN15568915
DSM 44852
GCA_025823245.1ScaffoldJACKVI000000000
SAMN15568920
DSM 45731
GCA_025821905.1ScaffoldJACKSU000000000
SAMN15568986
DSM 44160
GCA_025822555.1ContigJACKUC000000000
SAMN15568952
DSM 44833
GCA_025823035.1ScaffoldJACKVB000000000
SAMN15568927
DSM 44634
GCA_025822025.1ScaffoldJACKTA000000000
SAMN15568980
DSM 44428
GCA_025821945.1ScaffoldJACKSW000000000
SAMN15568984
DSM 44471
GCA_025821415.1ContigJACKRX000000000
SAMN15569009
DSM 44064
GCA_025822065.1ScaffoldJACKTC000000000
SAMN15568978
DSM 44049
GCA_025822785.1ScaffoldJACKUM000000000
SAMN15568942
DSM 44623
GCA_025821825.1ContigJACKSR000000000
SAMN15568989
DSM 44627
GCA_025821645.1ScaffoldJACKSI000000000
SAMN15568998
DSM 44577
GCA_022558505.1Complete genomeSAMN15569027
DSM 44163
GCA_025822645.1ScaffoldJACKUF000000000
SAMN15568949
DSM 45255
GCA_025823125.1ContigJACKVF000000000
SAMN15568923
DSM 45437
GCA_025823255.1ScaffoldJACKVL000000000
SAMN15568917
DSM 44602
GCA_025821845.1ScaffoldJACKSS000000000
SAMN15568988
DSM 44803
GCA_025821305.1ContigJACKRQ000000000
SAMN15569016
DSM 45145
GCA_025821485.1ScaffoldJACKRZ000000000
SAMN15569007
DSM 44572
GCA_025823385.1ContigJACKVQ000000000
SAMN15568912
DSM 46749
GCA_025822865.1ContigJACKUR000000000
SAMN15568937
DSM 44181
GCA_025823155.1ScaffoldJACKVE000000000
SAMN15568924
DSM 45000
GCA_025822965.1ScaffoldJACKUX000000000
SAMN15568931
DSM 44553
GCA_025821505.1ContigJACKSB000000000
SAMN15569005
DSM 45108
GCA_025821735.1ScaffoldJACKSL000000000
SAMN15568995
DSM 45176
GCA_025821405.1ScaffoldJACKRS000000000
SAMN15569014
DSM 44616
GCA_025821325.1ScaffoldJACKRR000000000
SAMN15569015
DSM 43992
GCA_025823355.1ScaffoldJACKVP000000000
SAMN15568913
DSM 44998
GCA_025822045.1ScaffoldJACKTB000000000
SAMN15568979
DSM 45441
GCA_025822885.1ScaffoldJACKUN000000000
SAMN15568941
DSM 44152
GCA_025822285.1ScaffoldJACKTO000000000
SAMN15568966
DSM 45663
GCA_025821785.1ContigJACKSO000000000
SAMN15568992
DSM 45059
GCA_025821385.1ScaffoldJACKRU000000000
SAMN15569012
DSM 44166
GCA_025821985.1ContigJACKSY000000000
SAMN15568982
CCUG 56329
GCA_025822665.1ScaffoldJACKUG000000000
SAMN15568948
CCUG 37460
GCA_025823185.1ScaffoldJACKVK000000000
SAMN15568918
DSM 44838
GCA_025822945.1ScaffoldJACKUV000000000
SAMN15568933
DSM 45595
GCA_025822715.1ScaffoldJACKUI000000000
SAMN15568946
DSM 45576
GCA_025822825.1ScaffoldJACKUQ000000000
SAMN15568938
DSM 45575
GCA_025821865.1ContigJACKSN000000000
SAMN15568993
DSM 44153
GCA_025821685.1ContigJACKSG000000000
SAMN15569000
DSM 45454
GCA_025822685.1ScaffoldJACKUJ000000000
SAMN15568945
DSM 44942
GCA_025821605.1ScaffoldJACKSF000000000
SAMN15569001
DSM 44241
GCA_025823135.1ScaffoldJACKVG000000000
SAMN15568922
DSM 45394
GCA_025821425.1ScaffoldJACKRY000000000
SAMN15569008
DSM 45633
GCA_025821265.1ScaffoldJACKRP000000000
SAMN15569017
DSM 44164
GCA_025822005.1ScaffoldJACKSZ000000000
SAMN15568981
DSM 43227
GCA_025822215.1ContigJACKTJ000000000
SAMN15568971
DSM 44147
GCA_025822365.1ContigJACKTN000000000
SAMN15568967
CCUG 37585
GCA_025823225.1ContigJACKVD000000000
SAMN15568925
DSM 45768
GCA_025821345.1ScaffoldJACKRV000000000
SAMN15569011
DSM 43999
GCA_025823285.1ScaffoldJACKVM000000000
SAMN15568916
DSM 45578
GCA_022558525.1Complete genomeSAMN15569026
DSM 44677
GCA_025822265.1ScaffoldJACKTM000000000
SAMN15568968
DSM 44680
GCA_025822525.1ScaffoldJACKTW000000000
SAMN15568958
DSM 44177
GCA_025822345.1ScaffoldJACKTQ000000000
SAMN15568964
DSM 44828
GCA_025822625.1ContigJACKUE000000000
SAMN15568950
DSM 46765
GCA_025821725.1ScaffoldJACKSM000000000
SAMN15568994
DSM 44633
GCA_025823065.1ScaffoldJACKVA000000000
SAMN15568928
DSM 45102
GCA_025822845.1ScaffoldJACKUS000000000
SAMN15568936
DSM 44017
GCA_025822435.1ScaffoldJACKTV000000000
SAMN15568959
DSM 45433
GCA_025822385.1ContigJACKTT000000000
SAMN15568961
DSM 43524
GCA_025822585.1ScaffoldJACKUD000000000
SAMN15568951
CCUG 46352
GCA_025823005.1ScaffoldJACKUY000000000
SAMN15568930
DSM 44244
GCA_025822495.1ScaffoldJACKTZ000000000
SAMN15568955
DSM 44368
GCA_025821465.1ScaffoldJACKRW000000000
SAMN15569010
DSM 44179
GCA_025821245.1ScaffoldJACKRO000000000
SAMN15569018
DSM 43637
GCA_025822705.1ScaffoldJACKUL000000000
SAMN15568943
DSM 43991
GCA_025823075.1ScaffoldJACKUU000000000
SAMN15568934
DSM 44556
GCA_025822205.1ContigJACKTK000000000
SAMN15568970
DSM 44220
GCA_025822145.1ScaffoldJACKTH000000000
SAMN15568973
DSM 45364
GCA_025821365.1ScaffoldJACKRT000000000
SAMN15569013
DSM 44077
GCA_025821885.1ScaffoldJACKST000000000
SAMN15568987
DSM 45363
GCA_025822535.1ScaffoldJACKUB000000000
SAMN15568953
CCUG 58730
GCA_025821585.1ContigJACKSE000000000
SAMN15569002
DSM 45391
GCA_025822245.1ScaffoldJACKTL000000000
SAMN15568969
DSM 44183
GCA_022558565.1Complete genomeSAMN15569023
DSM 44478
GCA_025823315.1ScaffoldJACKVJ000000000
SAMN15568919
DSM 44676
GCA_025821225.1ContigJACKRM000000000
SAMN15569020
DSM 45132
GCA_025822605.1ScaffoldJACKTY000000000
SAMN15568956
DSM 44078
GCA_025823345.1ContigJACKVO000000000
SAMN15568914
DSM 45785
GCA_025822085.1ScaffoldJACKTE000000000
SAMN15568976
DSM 45167
GCA_025822185.1ContigJACKTD000000000
SAMN15568977
DSM 44221
GCA_025822305.1ScaffoldJACKTP000000000
SAMN15568965
DSM 44340
GCA_025823025.1ScaffoldJACKUZ000000000
SAMN15568929
DSM 44679
GCA_025822165.1ScaffoldJACKTI000000000
SAMN15568972
DSM 44203
GCA_025822425.1ScaffoldJACKTU000000000
SAMN15568960
DSM 43271
GCA_025823105.1ContigJACKVC000000000
SAMN15568926
DSM 44242
GCA_025822745.1ScaffoldJACKUH000000000
SAMN15568947
DSM 44585
GCA_025821805.1ScaffoldJACKSQ000000000
SAMN15568990
DSM 44697
GCA_025822105.1ScaffoldJACKTF000000000
SAMN15568975
DSM 44222
GCA_025821625.1ScaffoldJACKSH000000000
SAMN15568999
DSM 44605
GCA_025822805.1ScaffoldJACKUO000000000
SAMN15568940
DSM 44223
GCA_025821255.1ScaffoldJACKRN000000000
SAMN15569019
DSM 45406
GCA_025822985.1ScaffoldJACKUW000000000
SAMN15568932
DSM 45643
GCA_025822895.1ScaffoldJACKUT000000000
SAMN15568935
DSM 43656
GCA_025821545.1ContigJACKSA000000000
SAMN15569006
DSM 45070
GCA_025821515.1ScaffoldJACKSC000000000
SAMN15569004
DSM 44076
GCA_025822325.1ScaffoldJACKTR000000000
SAMN15568963
DSM 44167
GCA_025821705.1ContigJACKSK000000000
SAMN15568996
DSM 44635
GCA_025821205.1ContigJACKRL000000000
SAMN15569021
DSM 43292
GCA_025821565.1ScaffoldJACKSD000000000
SAMN15569003
DSM 7251
GCA_025822475.1ScaffoldJACKUA000000000
SAMN15568954
CCUG 47168
GCA_025821665.1ScaffoldJACKSJ000000000
SAMN15568997
DSM 44615

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