ID 863217 - BioProject

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Accession: PRJEB55045 ID: 863217

EMG produced TPA metagenomics assembly of PRJEB30847 data set (Shotgun metagenome sequence library from bulk soil and rhizosphere samples of wild and domesticated barley genotypes).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB30847, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55045
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 28-Jul-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2469
WGS master	60
Publications
PubMed	1
PMC	1
Other datasets
BioSample	60
Assembly	60

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

59
59

Assembly	WGS	BioSample	Taxonomy
GCA_946479145.1	CAMLEV000000000	SAMEA110698798	Acidovorax radicis
GCA_946479735.1	CAMLHA000000000	SAMEA110698826	Asticcacaulis taihuensis
GCA_946481045.1	CAMLMX000000000	SAMEA110698819	Flavobacterium endophyticum
GCA_946479105.1	CAMLEA000000000	SAMEA110698794	Pedobacter ginsengisoli
GCA_946480625.1	CAMLKL000000000	SAMEA110698800	Pedobacter kyonggii
GCA_946480215.1	CAMLJE000000000	SAMEA110698810	Pseudomonas corrugata
GCA_946479945.1	CAMLJB000000000	SAMEA110698775	Pseudomonas kilonensis
GCA_946479165.1	CAMLEY000000000	SAMEA110698808	Stenotrophomonas maltophilia
GCA_946480765.1	CAMLLM000000000	SAMEA110698779	uncultured Acidovorax sp.
GCA_946480125.1	CAMLIY000000000	SAMEA110698778	uncultured Asticcacaulis sp.
GCA_946479055.1	CAMLEX000000000	SAMEA110698821	uncultured Bacteroidetes bacterium
GCA_946480595.1	CAMLKC000000000	SAMEA110698793	uncultured Candidatus Saccharibacteria bacterium
GCA_946479115.1	CAMLED000000000	SAMEA110698803	uncultured Candidatus Saccharibacteria bacterium
GCA_946479045.1	CAMLEB000000000	SAMEA110698823	uncultured Candidatus Saccharibacteria bacterium
GCA_946479665.1	CAMLGO000000000	SAMEA110698777	uncultured Candidatus Saccharibacteria bacterium
GCA_946480495.1	CAMLKO000000000	SAMEA110698768	uncultured Caulobacteraceae bacterium
GCA_946479035.1	CAMLDW000000000	SAMEA110698818	uncultured Chthonomonadaceae bacterium
GCA_946479885.1	CAMLHM000000000	SAMEA110698827	uncultured Devosia sp.
GCA_946482605.1	CAMLSE000000000	SAMEA110698787	uncultured Dyadobacter sp.
GCA_946480085.1	CAMLHZ000000000	SAMEA110698772	uncultured Flavobacteriales bacterium
GCA_946478775.1	CAMLDR000000000	SAMEA110698811	uncultured Flavobacteriales bacterium
GCA_946479125.1	CAMLET000000000	SAMEA110698807	uncultured Flavobacteriales bacterium
GCA_946479285.1	CAMLFH000000000	SAMEA110698791	uncultured Flavobacteriales bacterium
GCA_946479985.1	CAMLIF000000000	SAMEA110698797	uncultured Flavobacteriales bacterium
GCA_946479975.1	CAMLIX000000000	SAMEA110698780	uncultured Flavobacterium sp.
GCA_946478785.1	CAMLDD000000000	SAMEA110698804	uncultured Flavobacterium sp.
GCA_946478805.1	CAMLDC000000000	SAMEA110698801	uncultured Fluviicola sp.
GCA_946480055.1	CAMLID000000000	SAMEA110698785	uncultured Lysobacter sp.
GCA_946482565.1	CAMLSB000000000	SAMEA110698773	uncultured Lysobacteraceae bacterium
GCA_946481575.1	CAMLOE000000000	SAMEA110698806	uncultured Massilia sp.
GCA_946480865.1	CAMLLL000000000	SAMEA110698776	uncultured Mucilaginibacter sp.
GCA_946481715.1	CAMLOV000000000	SAMEA110698782	uncultured Mucilaginibacter sp.
GCA_946479225.1	CAMLFI000000000	SAMEA110698790	uncultured Mucilaginibacter sp.
GCA_946479965.1	CAMLHX000000000	SAMEA110698825	uncultured Mucilaginibacter sp.
GCA_946479085.1	CAMLEH000000000	SAMEA110698802	uncultured Opitutus sp.
GCA_946480015.1	CAMLIL000000000	SAMEA110698786	uncultured Oxalobacteraceae bacterium
GCA_946479705.1	CAMLHI000000000	SAMEA110698820	uncultured Oxalobacteraceae bacterium
GCA_946479255.1	CAMLFK000000000	SAMEA110698792	uncultured Oxalobacteraceae bacterium
GCA_946478765.1	CAMLDH000000000	SAMEA110698805	uncultured Oxalobacteraceae bacterium
GCA_946479715.1	CAMLHF000000000	SAMEA110698822	uncultured Pedobacter sp.
GCA_946480185.1	CAMLIG000000000	SAMEA110698769	uncultured Pedobacter sp.
GCA_946480325.1	CAMLJZ000000000	SAMEA110698809	uncultured Pedobacter sp.
GCA_946478755.1	CAMLDJ000000000	SAMEA110698799	uncultured Pedobacter sp.
GCA_946480105.1	CAMLIQ000000000	SAMEA110698771	uncultured Pedobacter sp.
GCA_946479075.1	CAMLDT000000000	SAMEA110698795	uncultured Polaromonas sp.
GCA_946479745.1	CAMLGZ000000000	SAMEA110698824	uncultured Pseudoxanthomonas sp.
GCA_946480915.1	CAMLLO000000000	SAMEA110698783	uncultured Sphingobacteriaceae bacterium
GCA_946479435.1	CAMLFX000000000	SAMEA110698789	uncultured Sphingobacteriales bacterium
GCA_946479955.1	CAMLIN000000000	SAMEA110698784	uncultured Sphingobacterium sp.
GCA_946479185.1	CAMLFF000000000	SAMEA110698796	uncultured Sphingobium sp.
GCA_946479505.1	CAMLGC000000000	SAMEA110698770	uncultured Sphingomonadaceae bacterium
GCA_946480205.1	CAMLIJ000000000	SAMEA110698774	uncultured Sphingomonas sp.
GCA_946480065.1	CAMLJA000000000	SAMEA110698813	uncultured Thermomonas sp.
GCA_946478645.1	CAMLCW000000000	SAMEA110698788	uncultured Variovorax sp.
GCA_946481675.1	CAMLOX000000000	SAMEA110698817	uncultured Verrucomicrobiales bacterium
GCA_946479135.1	CAMLEK000000000	SAMEA110698814	uncultured archaeon
GCA_946479205.1	CAMLFJ000000000	SAMEA110698812	uncultured bacterium
GCA_946480025.1	CAMLII000000000	SAMEA110698816	uncultured candidate division Zixibacteria bacterium
GCA_946478635.1	CAMLCX000000000	SAMEA110698815	uncultured proteobacterium

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EMG produced TPA metagenomics assembly of PRJEB30847 data set (Shotgun metagenome sequence library from bulk soil and rhizosphere samples of wild and domesticated barley genotypes).

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