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1.

Taeniopygia guttata

Transcriptics analysis of fovea and non-fovea in the P14 zebra finch retina

Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Osaka university
Accession:
PRJDB9812
ID:
834670
2.

Taeniopygia guttata

Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing

Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Genome sequencing
Scope:
Monoisolate
Arima Genomics
Accession:
PRJDB13233
ID:
816362
3.

Transcriptomics of Parental Care in the Hypothalamic-Septal Region of Female Zebra Finch Brain

Project data type: Raw sequence reads
Scope:
Multispecies
Eotvos Lorand Network of Research Excellence and Eotvos Lorand Univercity
Accession:
PRJNA808854
ID:
808854
4.

Single-cell RNA sequencing of the CFS414 zebra finch cell line

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
The Rockefeller University
Accession:
PRJNA802690
ID:
802690
5.

16S rRNA gene amplicon (515F/926R) libraries of Zebra finch Taeniopygia guttata eggshell samples.

The microbial environment modulates non-genetic maternal effects on egg immunity

Project data type: Other
Scope:
Monoisolate
GRONINGEN UNIVERSITY
Accession:
PRJEB45531
ID:
800313
6.

VAN_VEELEN_CLOACAL_T5_MICROBIOME_16S_ZEBRAFINCH

16S rRNA gene amplicon (515F/926R) libraries of Zebra finch Taeniopygia guttata cloacal samples.

Project data type: Other
Scope:
Monoisolate
GRONINGEN UNIVERSITY
Accession:
PRJEB45297
ID:
800311
7.

Emergence of sex-specific transcriptomes in a sexually-dimorphic brain nucleus

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Behavioral Neuroscience, Oregon Health & Science University
Accession:
PRJNA790926
ID:
790926
8.

Taeniopygia guttata isolate:CFS414 Passage 31

CFS414 long-read genome sequencing

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
The Rockefeller University
Accession:
PRJNA789356
ID:
789356
9.

Zebra finch transcriptomics using different NGS approaches

Project data type: Raw sequence reads
Scope:
Multispecies
Charles University
Accession:
PRJNA751848
ID:
751848
10.

Zebra finch ejaculates (Taeniopygia guttata castanotis), testis and somatic tissue (T. g. castanotis and one castanotis x guttata hybrid) sequencing

Project data type: Raw sequence reads
Scope:
Multispecies
Max Planck Institute for Ornithology
Accession:
PRJNA741250
ID:
741250
11.

Single-cell Next Generation Sequencing (scNGS) facilitates analysis of gonadal single cells transcriptomes and revealed germ cell heterogeneity

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Animal Genetic Engineering, Department of Agricultural Biotechnology, Seoul National University
Accession:
PRJNA737105
ID:
737105
12.

Brain transcriptome from estrogen manipulated juvenile zebra finches

Project data type: Raw sequence reads
Scope:
Multispecies
Duke University
Accession:
PRJNA698257
ID:
698257
13.

Zebra Finch (Taeniopygia guttata) sequencing

Project data type: Raw sequence reads
Scope:
Multispecies
American University
Accession:
PRJNA698222
ID:
698222
14.

Epigenetic effects of environmental exposures on nestling birds

Project data type: Raw sequence reads
Scope:
Multispecies
Cornell University
Accession:
PRJNA683215
ID:
683215
15.

Transcriptomic profiling of the songbird brain

Project data type: Raw sequence reads
Scope:
Multispecies
The Rockefeller University
Accession:
PRJNA678351
ID:
678351
16.

Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

Project data type: Raw sequence reads
Scope:
Multispecies
University of Copenhagen
Accession:
PRJNA645391
ID:
645391
17.

Single-nuclei RNA sequencing of HVC and RA in zebra finches

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Neuroscience, UT Southwestern Medical Center
Accession:
PRJNA643570
ID:
643570
18.

Zebra finch PGCs transcriptome

Project data type: Raw sequence reads
Scope:
Multispecies
Max Planck Institute for Ornithology-Seewiesen
Accession:
PRJNA637305
ID:
637305
19.

DNA methylation regulates transcription factor specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon [RNA-Seq]

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Biobix, Lab of Bioinformatics and Computational Genomics, Dept. Of Mathematical Modelling, Statistics and Bioinformatics, Ghent University
Accession:
PRJNA622690
ID:
622690
20.

DNA methylation regulates transcription factor specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon [RRBS]

Organism:
Taeniopygia guttata
Taxonomy:
Taeniopygia guttata (zebra finch)
Project data type: Epigenomics
Scope:
Multiisolate
Biobix, Lab of Bioinformatics and Computational Genomics, Dept. Of Mathematical Modelling, Statistics and Bioinformatics, Ghent University
Accession:
PRJNA622689
ID:
622689

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