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Accession: PRJNA300546 ID: 300546

Lamberticrinus messingi

Lamberticrinus messingi Transcriptome or Gene expression

To better understand the phylogeny of extant echinoderms and the placement of Xyloplax, we employed RNA-Seq to retrieve large numbers of orthologous loci from each transcriptome of 40 echinoderm species spanning deep divergences within each of the five extant classes with the aim of discovering orthologous peptide sequences that were well represented in asteroids, holothuroids, echinoids, ophiuroids and crinoids.
AccessionPRJNA300546
Data TypeTranscriptome or Gene expression
ScopeMonoisolate
OrganismLamberticrinus messingi[Taxonomy ID: 1541951]
Eukaryota; Metazoa; Echinodermata; Pelmatozoa; Crinoidea; Articulata; Hyocrinida; Hyocrinidae; Lamberticrinus; Lamberticrinus messingi
PublicationsJanies DA et al., "EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.", BMC Bioinformatics, 2016 Jan 22;17:48
Grants
  • "Collaborative Research: Assembling the Echinoderm Tree of Life" (Grant ID DEB 1036416, National Science Foundation)
SubmissionRegistration date: 29-Oct-2015
EchinoTOL
Related Resources
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments1
Publications
PubMed1
PMC1
Other datasets
BioSample1
SRA Data Details
ParameterValue
Data volume, Gbases5
Data volume, Mbytes3157

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