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Items: 1 to 20 of 56

1.

Global patterns of enhancer activity during sea urchin embryogenesis assessed by eRNA profiling

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Other
Scope:
Multiisolate
Ettensohn, Biological Sciences, Carnegie Mellon University
Accession:
PRJNA715756
ID:
715756
2.

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ATAC-Seq)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Biology, College of Staten Island
Accession:
PRJNA673239
ID:
673239
3.

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Biology, College of Staten Island
Accession:
PRJNA673238
ID:
673238
4.

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Other
Scope:
Multiisolate
Biology, College of Staten Island
Accession:
PRJNA673237
ID:
673237
5.

Characterization and expression analysis of miRNAs in the larvae of sea urchin Strongylocentrotus nudus induced by CO2-driven seawater acidification

Project data type: Raw sequence reads
Scope:
Multispecies
Liaoning Marine Fisheries Research Institute
Accession:
PRJNA672808
ID:
672808
6.

Regulation of dynamic pigment cell states at single-cell resolution

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Brown university
Accession:
PRJNA649738
ID:
649738
7.

A single cell RNA-seq resource for early sea urchin development

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biology, Cell Biology & Biochemistry, Brown University
Accession:
PRJNA627693
ID:
627693
8.

Single cell RNA‐seq in the sea urchin embryo show marked cell‐type specificity in the Delta/Notch pathway

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biology, Cell Biology & Biochemistry, Brown University
Accession:
PRJNA554833
ID:
554833
9.

Strongylocentrotus purpuratus

Epigenomics and transcriptomics of Stronglyocentrotus purpuratus in a transgenerational context

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of California Santa Barbara
Accession:
PRJNA548926
ID:
548926
10.

Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Ettensohn, Biological Sciences, Carnegie Mellon University
Accession:
PRJNA543356
ID:
543356
11.

Strongylocentrotus purpuratus

Strongylocentrotus purpuratus early transcriptome

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Humboldt University
Accession:
PRJNA531297
ID:
531297
12.

Strongylocentrotus purpuratus

Parental environments alter DNA methylation in offspring of the purple sea urchin, Strongylocentrotus purpuratus

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
University of California Santa Barbara
Accession:
PRJNA525826
ID:
525826
13.

DNA Zoo

Project data type: Genome sequencing and assembly
Scope:
Multispecies
DNA Zoo
Accession:
PRJNA512907
ID:
512907
14.

Strongylocentrotus purpuratus

Moderate and extreme low-pH adaptive alleles revealed in a single generation selection experiment from standing genetic variation in the purple sea urchin, Strongylocentrotus purpuratus

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Variation
Scope:
Multiisolate
University of Vermont
Accession:
PRJNA479817
ID:
479817
15.

Sea urchin sequencing data

Project data type: Raw sequence reads
Scope:
Multispecies
Liaoning Marine Fisheries Research Institute
Accession:
PRJNA447868
ID:
447868
16.

Strongylocentrotus purpuratus

Strongylocentrotus purpuratus Raw sequence reads

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Raw sequence reads
Scope:
Other
Liaoning Marine Fisheries Research Institute
Accession:
PRJNA445768
ID:
445768
17.

Genome sequencing of C. gigas, L. anatina and S. purpuratus

Project data type: Raw sequence reads
Scope:
Multispecies
Max-Planck Institute for Immunobiology and Epigenetics
Accession:
PRJNA418031
ID:
418031
18.

Strongylocentrotus purpuratus

Gene expression in tissues from an immune challenged adult sea urchin (Strongylocentrotus purpuratus)

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Biological Sciences, The George Washington University
Accession:
PRJNA381801
ID:
381801
19.

Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
Genetics, Faculty of Biology, University of Barcelona
Accession:
PRJNA381153
ID:
381153
20.

Strongylocentrotus purpuratus

The sea urchin larval response to immune challenge with Vibrio diazotrophicus

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Biological Sciences, The George Washington University
Accession:
PRJNA380184
ID:
380184

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