Genome-wide maps of CTCF in glioblastoma (ID 579583) - BioProject

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Accession: PRJNA579583 ID: 579583

Genome-wide maps of CTCF in glioblastoma (human)

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This project is a component of the Functional enhancers shape extrachromosomal oncogene amplifications

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3 additional projects are components of the Functional enhancers shape extrachromosomal oncogene amplifications.

89076 additional projects are related by organism.

Here we have used CTCF ChIP-seq in glioblastoma to understand CTCF elements in the context of chromatin topology genome-wide. Overall design: Examination of CTCF in 2 glioblastoma cell models.

Accession	PRJNA579583; GEO: GSE139416
Data Type	Epigenomics
Scope	Multiisolate
Organism	Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
Publications	Morton AR et al., "Functional Enhancers Shape Extrachromosomal Oncogene Amplifications.", Cell, 2019 Nov 27;179(6):1330-1341.e13
Submission	Registration date: 25-Oct-2019 Scacheri Lab, Genetics and Genome Sciences, Case Western Reserve University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	2
Publications
PubMed	1
PMC	1
Other datasets
BioSample	2
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	543

SRA Data Details

Parameter	Value
Data volume, Gbases	78
Data volume, Mbytes	24085

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Genome-wide maps of CTCF in glioblastoma (human)

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