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Select item 92023761.

Draft Genome Sequences of 18 Streptococcus Strains Isolated from Live Dietary Supplements and Cultured Food Products

Tammy J. Barnaba, Jayanthi Gangiredla, Mark K. Mammel, David W. Lacher, Carmen Tartera

Microbiol Resour Announc. 2022 Jun; 11(6): e00266-22. Published online 2022 May 26. doi: 10.1128/mra.00266-22

PMCID:: PMC9202376

Abstract Article PDF–164K

Select item 87593742.

Draft Genome Sequences of Nine Bacillus Strains and Two Weizmannia Strains Isolated from Live Dietary Supplements and a Cultured Food Product

Tammy J. Barnaba, Jayanthi Gangiredla, Mark K. Mammel, David W. Lacher, Carmen Tartera

Microbiol Resour Announc. 2022 Jan; 11(1): e00908-21. Published online 2022 Jan 13. doi: 10.1128/mra.00908-21

PMCID:: PMC8759374

Abstract Article PDF–242K

Select item 78709333.

The distribution of antibiotic resistance genes in chicken gut microbiota commensals

Helena Juricova, Jitka Matiasovicova, Tereza Kubasova, Darina Cejkova, Ivan Rychlik

Sci Rep. 2021; 11: 3290. Published online 2021 Feb 8. doi: 10.1038/s41598-021-82640-3

PMCID:: PMC7870933

Abstract Article PDF–4.1M

Select item 72835934.

Aerococcus urinae Isolated from Women with Lower Urinary Tract Symptoms: In Vitro Aggregation and Genome Analysis

Evann E. Hilt, Catherine Putonti, Krystal Thomas-White, Amanda L. Lewis, Karen L. Visick, Nicole M. Gilbert, Alan J. Wolfe

J Bacteriol. 2020 Jul; 202(13): e00170-20. Prepublished online 2020 Apr 13. Published online 2020 Jun 9. doi: 10.1128/JB.00170-20

PMCID:: PMC7283593

Abstract Article PDF–468K

Select item 66584745.

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

Heike Sichtig, Timothy Minogue, Yi Yan, Christopher Stefan, Adrienne Hall, Luke Tallon, Lisa Sadzewicz, Suvarna Nadendla, William Klimke, Eneida Hatcher, Martin Shumway, Dayanara Lebron Aldea, Jonathan Allen, Jeffrey Koehler, Tom Slezak, Stephen Lovell, Randal Schoepp, Uwe Scherf

Nat Commun. 2019; 10: 3313. Published online 2019 Jul 25. doi: 10.1038/s41467-019-11306-6

PMCID:: PMC6658474

Abstract Article PDF–821K

Select item 65435336.

Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut

Xiaofang Jiang, A. Brantley Hall, Timothy D. Arthur, Damian R. Plichta, Christian T. Covington, Mathilde Poyet, Jessica Crothers, Peter L. Moses, Andrew C. Tolonen, Hera Vlamakis, Eric J. Alm, Ramnik J. Xavier

Science. Author manuscript; available in PMC 2019 Jul 11.

Published in final edited form as: Science. 2019 Jan 11; 363(6423): 181–187. doi: 10.1126/science.aau5238

PMCID:: PMC6543533

Abstract Article PDF–976K

Select item 63620887.

Single-molecule sequencing detection of N6-methyladenine in microbial reference materials

Alexa B. R. McIntyre, Noah Alexander, Kirill Grigorev, Daniela Bezdan, Heike Sichtig, Charles Y. Chiu, Christopher E. Mason

Nat Commun. 2019; 10: 579. Published online 2019 Feb 4. doi: 10.1038/s41467-019-08289-9

PMCID:: PMC6362088

Abstract Article PDF–842K

Select item 63576508.

Whole-Genome Shotgun Sequencing and Characterization of Probiotic Strain Clostridium butyricum UBCB 70 To Assess Its Safety

Ayesha Sulthana, Archana Thorramamidi, Suvarna G. Lakshmi, Ratna Sudha Madempudi

Microbiol Resour Announc. 2019 Jan; 8(5): e01732-18. Published online 2019 Jan 31. doi: 10.1128/MRA.01732-18

PMCID:: PMC6357650

Abstract Article PDF–118K

Select item 60698809.

Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures

Matej Medvecky, Darina Cejkova, Ondrej Polansky, Daniela Karasova, Tereza Kubasova, Alois Cizek, Ivan Rychlik

BMC Genomics. 2018; 19: 561. Published online 2018 Jul 31. doi: 10.1186/s12864-018-4959-4

PMCID:: PMC6069880

Abstract Article PDF–2.0M

Select item 602594810.

Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products

Tammy J. Barnaba, Jayanthi Gangiredla, Mark K. Mammel, David W. Lacher, Christopher A. Elkins, Keith A. Lampel, Chris A. Whitehouse, Carmen Tartera

Genome Announc. 2018 Jun; 6(26): e00610-18. Published online 2018 Jun 28. doi: 10.1128/genomeA.00610-18

PMCID:: PMC6025948

Abstract Article PDF–121K

Select item 602592911.

Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements

Jayanthi Gangiredla, Tammy J. Barnaba, Mark K. Mammel, David W. Lacher, Christopher A. Elkins, Keith A. Lampel, Chris A. Whitehouse, Carmen Tartera

Genome Announc. 2018 Jun; 6(26): e00621-18. Published online 2018 Jun 28. doi: 10.1128/genomeA.00621-18

PMCID:: PMC6025929

Abstract Article PDF–116K

Select item 599624212.

Differential Proteomic Analysis of Lactic Acid Bacteria—Escherichia coli O157:H7 Interaction and Its Contribution to Bioprotection Strategies in Meat

Alejandra Orihuel, Lucrecia Terán, Jenny Renaut, Graciela M. Vignolo, André M. De Almeida, María L. Saavedra, Silvina Fadda

Front Microbiol. 2018; 9: 1083. Published online 2018 Jun 5. doi: 10.3389/fmicb.2018.01083

PMCID:: PMC5996242

Abstract Article PDF–3.4M

Select item 564638613.

High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community

Debora Garzetti, Sandrine Brugiroux, Boyke Bunk, Rüdiger Pukall, Kathy D. McCoy, Andrew J. Macpherson, Bärbel Stecher

Genome Announc. 2017 Oct; 5(42): e00758-17. Published online 2017 Oct 19. doi: 10.1128/genomeA.00758-17

PMCID:: PMC5646386

Abstract Article PDF–123K

Select item 556678814.

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

Sander Wuyts, Stijn Wittouck, Ilke De Boeck, Camille N. Allonsius, Edoardo Pasolli, Nicola Segata, Sarah Lebeer

mSystems. 2017 Jul-Aug; 2(4): e00061-17. Published online 2017 Aug 22. doi: 10.1128/mSystems.00061-17

PMCID:: PMC5566788

Abstract Article PDF–2.1M

Select item 551015815.

Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri

Yasuhiro TANIZAWA, Hisami KOBAYASHI, Eli KAMINUMA, Mitsuo SAKAMOTO, Moriya OHKUMA, Yasukazu NAKAMURA, Masanori ARITA, Masanori TOHNO

Biosci Microbiota Food Health. 2017; 36(3): 129–134. Published online 2017 Mar 4. doi: 10.12938/bmfh.16-026

PMCID:: PMC5510158

Abstract Article PDF–744K

Select item 505164116.

Comparative evaluation of the genomes of three common Drosophila-associated bacteria

Kristina Petkau, David Fast, Aashna Duggal, Edan Foley

Biol Open. 2016 Sep 15; 5(9): 1305–1316. Published online 2016 Aug 4. doi: 10.1242/bio.017673

PMCID:: PMC5051641

Abstract Article PDF–1.6M

Select item 466743017.

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

Zhihong Sun, Hugh M. B. Harris, Angela McCann, Chenyi Guo, Silvia Argimón, Wenyi Zhang, Xianwei Yang, Ian B Jeffery, Jakki C. Cooney, Todd F. Kagawa, Wenjun Liu, Yuqin Song, Elisa Salvetti, Agnieszka Wrobel, Pia Rasinkangas, Julian Parkhill, Mary C. Rea, Orla O'Sullivan, Jarmo Ritari, François P. Douillard, R. Paul Ross, Ruifu Yang, Alexandra E. Briner, Giovanna E. Felis, Willem M. de Vos, Rodolphe Barrangou, Todd R. Klaenhammer, Page W. Caufield, Yujun Cui, Heping Zhang, Paul W. O'Toole

Nat Commun. 2015; 6: 8322. Published online 2015 Sep 29. doi: 10.1038/ncomms9322