| PRJNA996229 | Contigs | Acanthaster planci | Acanthaster planci genome (CSIRO Applied Genomics Initiative) |
| PRJNA995347 | Contigs | Achroia grisella | Achroia grisella (lesser wex moth) genome (CSIRO Applied Genomics Initiative) |
| PRJNA1007749 | Contigs | Achroia grisella | Achroia grisella RefSeq BioProject (NCBI) |
| PRJNA1013826 | Contigs | Acropora spathulata | Acropora spathulata genome (CSIRO Applied Genomics Initiative) |
| PRJNA913637 | Scaffolds | Anoplolepis gracilipes | Anoplolepis gracilipes (Yellow Crazy Ant) genome (Rahul Vivek Rane) |
| PRJNA833907 | Chromosomes | Bactrocera neohumeralis | Bactrocera neohumeralis isolate:Rockhampton Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA560467 | Chromosomes | Bactrocera tryoni | Bactrocera tryoni isolate:S06 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA904017 | Contigs | Centroberyx gerrardi | Centroberyx gerrardi genome (CSIRO Applied Genomics Initiative) |
| PRJNA798169 | Contigs | Ceriodaphnia dubia | Ceriodaphnia dubia strain:CSIRO Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA798166 | Scaffolds | Chironomus tepperi | Chironomus tepperi strain:1889 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA1001821 | Contigs | Creontiades dilutus | Creontiades dilutus (green mirid) genome (CSIRO Applied Genomics Initiative) |
| PRJNA996309 | Scaffolds | Crown of thorns (female) genome | Crown of thorns (female) genome (CSIRO Applied Genomics Initiative) |
| PRJNA798159 | Chromosomes | Daphnia carinata | Daphnia carinata strain:CSIRO-1 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA1001588 | Contigs | Dermolepida albohirtum | Dermolepida albohirtum (Greyback cane beetle) genome (CSIRO Applied Genomics Initiative) |
| PRJNA879275 | Contigs | Emydura macquarii macquarii | Emydura macquarii macquarii (Murray River turtle) genome (CSIRO Applied Genomics Initiative) |
| PRJNA898089 | Scaffolds | Fish | Reference sequences for Australian freshwater fishes: Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA893711 | Contigs | Galleria mellonella | Galleria mellonella genome (CSIRO Applied Genomics Initiative) |
| PRJNA1012825 | Contigs | Gastrolobium bilobum | Gastrolobium bilobum genome (CSIRO Applied Genomics Initiative) |
| PRJNA1012807 | Contigs | Gastrolobium villosum | Gastrolobium villosum genome (CSIRO Applied Genomics Initiative) |
| PRJNA1013038 | Chromosomes | Heteronotia binoei | Heteronotia binoei genome (CSIRO Applied Genomics Initiative) |
| PRJNA1026920 | Chromosomes | Heteronotia binoei | Heteronotia binoei RefSeq Genome sequencing (NCBI) |
| PRJNA1000277 | Contigs | Kuschelorhynchus macadamiae | Kuschelorhynchus macadamiae (Macadamia seed weevil) genome (CSIRO Applied Genomics Initiative) |
| PRJNA799061 | Chromosomes | Lolium rigidum | Lolium rigidum isolate:Fournier-level lab strain Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA911933 | Chromosomes | Lycium ferocissimum | Lycium ferocissimum genome sequencing (CSIRO Applied Genomics Initiative) |
| PRJNA1008610 | Chromosomes | Lycium ferocissimum | Lycium ferocissimum isolate: CSIRO_LF1 RefFSeq BioProject (NCBI) |
| PRJNA1000645 | Contigs | Musca vetustissima | Musca vetustissima (bushfly) genome (CSIRO Applied Genomics Initiative) |
| PRJNA912258 | Contigs | Pezoporus wallicus | Pezoporus wallicus (Eastern Ground Parrot) genome (CSIRO Applied Genomics Initiative) |
| PRJNA1000218 | Contigs | Pocillopora verrucosa | Pocillopora verrucosa (cauliflower coral) genome (CSIRO Applied Genomics Initiative) |
| PRJNA1006417 | Contigs | Pocillopora verrucosa | Pocillopora verrucosa isolate:Pver-AG016-CSIRO1 RefSeq BioProject (NCBI) |
| PRJNA803269 | Chromosomes | Raphanus raphanistrum | Raphanus raphanistrum isolate:CSIRO-KN1 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA574245 | Chromosomes | Rattus rattus | Rattus rattus isolate:New Zealand Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA1000703 | Contigs | Saccostrea cucullata | Saccostrea cucullata (hooded oyster) genome (CSIRO Applied Genomics Initiative) |
| PRJNA1071555 | Contigs | Saccostrea cucullata | Saccostrea cucullata isolate:strain A RefSeq Genome sequencing (NCBI) |
| PRJNA1015632 | Contigs | Saccostrea echinata | Saccostrea echinata (Sydney rock oyster) genome (CSIRO Applied Genomics Initiative) |
| PRJNA1046542 | Contigs | Saccostrea echinata | Saccostrea echinata RefSeq Genome sequencing (NCBI) |
| PRJNA809428 | Chromosomes | Spodoptera frugiperda | Spodoptera frugiperda isolate:SF20-4 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA1000647 | Contigs | Stylophora pistillata | Stylophora pistillata (smooth cauliflower coral) genome (CSIRO Applied Genomics Initiative) |
| PRJNA911005 | Contigs | Tineola bisselliella | Tineola bisselliella isolate:Ti02 Genome sequencing and assembly (CSIRO Applied Genomics Initiative) |
| PRJNA1002986 | Contigs | Ylistrum balloti | Ylistrum balloti genome (CSIRO Applied Genomics Initiative) |
| PRJNA1023226 | Contigs | Ylistrum balloti | Ylistrum balloti RefSeq BioProject (NCBI) |
| PRJNA1015527 | Contigs | Zophobas morio | Zophobas morio (superworm) genome (CSIRO Applied Genomics Initiative) |
| PRJNA1087301 | Contigs | Zophobas morio | Zophobas morio RefSeq Genome sequencing (NCBI) |