ID 239991 - BioProject

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Accession: PRJNA239991 ID: 239991

TB-ARC RNASeq

See Genome Information for Mycobacterium tuberculosis

Drug resistance in M. tuberculosis is becoming an increasing problem with the rise of multi-drug resistant (MDR-), extensively drug resistant (XDR-) and totally drug resistant (TDR-) forms of the disease. This NIAID-funded study aims to transcriptionally profile strains of M. tuberculosis using deep sequencing (RNAseq) to study their response to antibiotic exposure in order to characterize a common network of pathogen responses involved in the dynamics of antibiotic resistance.

Accession	PRJNA239991
Type	Umbrella Comparative genomics project (Subtype:Comparative genomics)
Organism	Mycobacterium tuberculosis[Taxonomy ID: 1773] Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis
Submission	Registration date: 4-Mar-2014 Broad Institute
Related Resources	TB-ARC RNASeq at Broad Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	544
Other datasets
BioSample	544

SRA Data Details

Parameter	Value
Data volume, Gbases	1,033
Data volume, Tbytes	0.52

This project encompasses the following 179 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

SRA or Trace

179

BioProject accession	Assembly level	Organism	Title
PRJNA239990	SRA or Trace	Mycobacterium tuberculosis	TB-ARC RNASeq (Broad Institute)
PRJNA236915	SRA or Trace	Mycobacterium tuberculosis 01-Cr4_ND_3_A	TB-ARC RNASeq (Broad Institute)
PRJNA236801	SRA or Trace	Mycobacterium tuberculosis 01-Ps1_0_A	TB-ARC RNASeq (Broad Institute)
PRJNA236923	SRA or Trace	Mycobacterium tuberculosis 02-Cr4_ND_3_B	TB-ARC RNASeq (Broad Institute)
PRJNA236813	SRA or Trace	Mycobacterium tuberculosis 02-Ps1_0_B	TB-ARC RNASeq (Broad Institute)

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TB-ARC RNASeq

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