See
Genome Information for Homo sapiens
We have sequenced the CHM13hTERT human cell line on the Oxford Nanopore GridION. We have also sequenced approximately 50x coverage using 10X Genomics as well as BioNano DLS and Arima Genomics HiC. PacBio data for this cell line has been previously generated by the Washington University School of Medicine and the University of Washington, and is available from NCBI SRA.
Human genomic DNA was extracted from the cultured cell line. As the DNA is native, modified bases will be preserved. We followed Josh Quick's ultra-long read (UL) protocol for library preparation and sequencing.
| Accession | PRJNA686988 |
| Type | Umbrella project |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Submission | Registration date: 21-Dec-2020
T2T Consortium- University of California, Santa Cruz
|
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 88845 |
| Genomic DNA | 73 |
| Transcript | 88772 |
| SRA Experiments | 259 |
| Protein Sequences | 129662 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Complete genome Chromosomes Total |
2
1
3
|
|