marine sediment metagenome (ID 635695) - BioProject

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Accession: PRJNA635695 ID: 635695

marine sediment metagenome

Guaymas Basin sediments thermophilic enrichment cultures shotgun DNA assembly

Here, we characterized thermophilic microorganisms capable of polymeric substrates degradation by applying complementary methods from experimental enrichment cultures, 16S rRNA and shotgun DNA sequencing. More...

Accession	PRJNA635695
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine sediment metagenome[Taxonomy ID: 412755] unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
Submission	Registration date: 1-Apr-2021 Marine Biological Laboratory
Related Resources	Ruff Lab
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	20
SRA Experiments	11
Other datasets
BioSample	20
Assembly	20

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

20
20

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_017656475.1	JACDNT000000000	SAMN15049707	GB_MAG2_100	Archaeoglobus sp.
GCA_017656505.1	JACDNU000000000	SAMN15049708	GB_MAG3_049	Archaeoglobus sp.
GCA_017656255.1	JACDOE000000000	SAMN15049718	GB_MAG13_007	Bacillaceae bacterium
GCA_017656265.1	JACDOD000000000	SAMN15049717	GB_MAG12_076	Bacillaceae bacterium
GCA_017656135.1	JACDOJ000000000	SAMN15049723	GB_MAG18_067	Bacillota bacterium
GCA_017656145.1	JACDOI000000000	SAMN15049722	GB_MAG17_124	Bacillota bacterium
GCA_017656295.1	JACDOC000000000	SAMN15049716	GB_MAG11_116	Bacillus sp. (in: firmicutes)
GCA_017656235.1	JACDOF000000000	SAMN15049719	GB_MAG14_061	Brevibacillus sp.
GCA_017656455.1	JACDNW000000000	SAMN15049710	GB_MAG5_103	Candidatus Neomarinimicrobiota bacterium
GCA_017656425.1	JACDNV000000000	SAMN15049709	GB_MAG4_043	Candidatus Neomarinimicrobiota bacterium
GCA_017656165.1	JACDOL000000000	SAMN15049725	GB_MAG20_002	Desulfotomaculum sp.
GCA_017656395.1	JACDNY000000000	SAMN15049712	GB_MAG7_055	Kosmotoga sp.
GCA_017656185.1	JACDOK000000000	SAMN15049724	GB_MAG19_121	Peptococcaceae bacterium
GCA_017656305.1	JACDOG000000000	SAMN15049720	GB_MAG15_131	Thermoanaerobacteraceae bacterium
GCA_017656495.1	JACDNS000000000	SAMN15049706	GB_MAG1_027	Thermococcus sp.
GCA_017656385.1	JACDNX000000000	SAMN15049711	GB_MAG6_111	Thermodesulfobacterium sp.
GCA_017656345.1	JACDNZ000000000	SAMN15049713	GB_MAG8_064	Thermosipho sp. (in: thermotogales)
GCA_017656335.1	JACDOA000000000	SAMN15049714	GB_MAG9_058	Thermosipho sp. (in: thermotogales)
GCA_017656155.1	JACDOH000000000	SAMN15049721	GB_MAG16_081	Thermosyntropha sp.
GCA_017656375.1	JACDOB000000000	SAMN15049715	GB_MAG10_013	Thermovirga sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	39
Data volume, Mbytes	16859

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marine sediment metagenome

Guaymas Basin sediments thermophilic enrichment cultures shotgun DNA assembly

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