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Accession: PRJNA793009 ID: 793009

Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)

Analysis of CITE-seq data , Nuclei RNA-seq data and single cell RNA-seq data on CD45+ and CD45- cells isolated from the livers of mice fed a standard diet (SD) or western diet (WD; fat, cholesterol and sugar), from healthy and steatotic human livers, from hamster liver, pig liver, chicken liver, monkey liver and zebrafish liver. More...
AccessionPRJNA793009; GEO: GSE192740
Data TypeTranscriptome or Gene expression
ScopeMultispecies
Publications
  • Guilliams M et al., "Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches.", Cell, 2022 Jan 20;185(2):379-396.e38
  • Habenicht LKL et al., "The C1q-ApoE complex: A new hallmark pathology of viral hepatitis and nonalcoholic fatty liver disease.", Front Immunol, 2022;13:970938
SubmissionRegistration date: 29-Dec-2021
VIB Inflammation Research Center, VIB-University of Ghent
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments132
Publications
PubMed2
PMC2
Other datasets
BioSample132
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes6317
SRA Data Details
ParameterValue
Data volume, Gbases3,591
Data volume, Tbytes1.53

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