U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination

Links from BioSample

Accession: PRJNA279279 ID: 279279

bioreactor metagenome

Metagenomic analysis of thiocyanate and cyanide biodegrading microbial consortia Metagenome

Gold mining and other industrial activities make extensive use of cyanide (CN-) and produce large volumes of thiocyanate- (SCN-) contaminated wastewater that must be treated before reuse in mining processes. More...
AccessionPRJNA279279
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismbioreactor metagenome[Taxonomy ID: 1076179]
unclassified sequences; metagenomes; ecological metagenomes; bioreactor metagenome
PublicationsKantor RS et al., "Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.", Environ Microbiol, 2015 Dec;17(12):4929-41
SubmissionRegistration date: 13-Sep-2016
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)31197
WGS master233
SRA Experiments19
Protein Sequences801474
Publications
PubMed1
Other datasets
BioSample300
Assembly233
Assembly details:
Assembly levelNumber of Assemblies
199
34
233
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001725205.1ScaffoldMEFR00000000SAMN03652494
-
GCA_001724025.1ScaffoldMEDJ00000000SAMN03652429
-
GCA_001897435.1ScaffoldMKSV00000000SAMN05660538
59-55
GCA_001897915.1ScaffoldMKRM00000000SAMN05660503
65-7
GCA_001724055.1ContigMEDK00000000SAMN03652430
-
GCA_001724795.1ContigMEDM00000000SAMN03652432
-
GCA_001724785.1ContigMEDL00000000SAMN03652431
-
GCA_001897345.1ScaffoldMKSP00000000SAMN05660532
38-8
GCA_001897925.1ScaffoldMKRP00000000SAMN05660506
39-4
GCA_001897425.1ScaffoldMKSW00000000SAMN05660539
69-20
GCA_001898585.1ScaffoldMKUI00000000SAMN05660577
62-46
GCA_001897905.1ScaffoldMKRG00000000SAMN05660497
62-7
GCA_001897755.1ScaffoldMKUJ00000000SAMN05660578
64-13
GCA_001724035.1ContigMEDN00000000SAMN03652433
-
GCA_001897775.1ScaffoldMKUK00000000SAMN05660579
69-12
GCA_001897445.1ScaffoldMKSX00000000SAMN05660540
33-17
GCA_001898075.1ScaffoldMKSD00000000SAMN05660520
40-19
GCA_001897795.1ScaffoldMKUL00000000SAMN05660580
41-28
GCA_001897475.1ScaffoldMKSY00000000SAMN05660541
43-37
GCA_001898015.1ScaffoldMKRW00000000SAMN05660513
62-8
GCA_001896865.1ScaffoldMKRH00000000SAMN05660498
64-11
GCA_001896945.1ScaffoldMKRL00000000SAMN05660502
64-6
GCA_001897995.1ScaffoldMKRV00000000SAMN05660512
65-37
GCA_001896805.1ScaffoldMKRE00000000SAMN05660495
65-7
GCA_001897135.1ScaffoldMKSE00000000SAMN05660521
66-12
GCA_001724815.1ContigMEDO00000000SAMN03652434
-
GCA_001898035.1ScaffoldMKRX00000000SAMN05660514
55-13
GCA_001897505.1ScaffoldMKSZ00000000SAMN05660542
36-12
GCA_001897035.1ScaffoldMKRS00000000SAMN05660509
45-6
GCA_001897535.1ScaffoldMKTC00000000SAMN05660545
37-13
GCA_001897515.1ScaffoldMKTA00000000SAMN05660543
41-46
GCA_001897525.1ScaffoldMKTB00000000SAMN05660544
43-16
GCA_001897855.1ScaffoldMKUO00000000SAMN05660583
43-93
GCA_001897835.1ScaffoldMKUN00000000SAMN05660582
46-16
GCA_001897155.1ScaffoldMKSF00000000SAMN05660522
47-18
GCA_001898165.1ContigMKTD00000000SAMN05660546
43-41
GCA_001897595.1ScaffoldMKTE00000000SAMN05660547
44-10
GCA_001724075.1ContigMEDP00000000SAMN03652435
-
GCA_001724095.1ScaffoldMEDQ00000000SAMN03652436
-
GCA_001725665.1ScaffoldMEFS00000000SAMN03652495
-
GCA_001898115.1ScaffoldMKSQ00000000SAMN05660533
67-29
GCA_001897025.1ScaffoldMKRY00000000SAMN05660515
67-6
GCA_001897585.1ScaffoldMKTF00000000SAMN05660548
64-34
GCA_001898655.1ScaffoldMKUR00000000SAMN05660586
66-26
GCA_001897215.1ScaffoldMKSJ00000000SAMN05660526
66-5
GCA_001898625.1ScaffoldMKUP00000000SAMN05660584
67-32
GCA_001897615.1ScaffoldMKTG00000000SAMN05660549
68-10
GCA_001897845.1ScaffoldMKUS00000000SAMN05660587
68-12
GCA_001898665.1ScaffoldMKUT00000000SAMN05660588
68-20
GCA_001898645.1ScaffoldMKUQ00000000SAMN05660585
70-64
GCA_001898725.1ScaffoldMKUV00000000SAMN05660590
37-49
GCA_001898705.1ContigMKUU00000000SAMN05660589
38-128
GCA_001897745.1ScaffoldMKUH00000000SAMN05660576
66-26
GCA_001897825.1ScaffoldMKUM00000000SAMN05660581
36-38
GCA_001899175.1ScaffoldMKVH00000000SAMN05660602
59-99
GCA_001897305.1ContigMKSO00000000SAMN05660531
47-87
GCA_001897295.1ScaffoldMKSN00000000SAMN05660530
49-20
GCA_001896875.1ScaffoldMKRI00000000SAMN05660499
68-7
GCA_001898185.1ContigMKTI00000000SAMN05660551
73-145
GCA_001898175.1ScaffoldMKTH00000000SAMN05660550
73-92
GCA_001897185.1ScaffoldMKSG00000000SAMN05660523
32-24
GCA_001897225.1ScaffoldMKSK00000000SAMN05660527
38-26
GCA_001899005.1ScaffoldMKUW00000000SAMN05660591
44-23
GCA_001898225.1ScaffoldMKTJ00000000SAMN05660552
54-19
GCA_001898785.1ScaffoldMKVE00000000SAMN05660599
36-9
GCA_001898255.1ScaffoldMKTK00000000SAMN05660553
39-10
GCA_001724115.1ScaffoldMEDR00000000SAMN03652437
-
GCA_001897605.1ScaffoldMKTL00000000SAMN05660554
38-18
GCA_001896915.1ScaffoldMKRK00000000SAMN05660501
43-6
GCA_001725215.1ScaffoldMEFT00000000SAMN03652496
-
GCA_001725235.1ScaffoldMEFU00000000SAMN03652497
-
GCA_001724135.1ContigMEDS00000000SAMN03652438
-
GCA_001725255.1ContigMEFV00000000SAMN03652498
-
GCA_001724175.1ScaffoldMEDT00000000SAMN03652439
-
GCA_001898745.1ScaffoldMKUX00000000SAMN05660592
67-8
GCA_001899045.1ScaffoldMKUY00000000SAMN05660593
63-57
GCA_001899085.1ScaffoldMKVB00000000SAMN05660596
66-14
GCA_001899065.1ScaffoldMKUZ00000000SAMN05660594
66-22
GCA_001899075.1ScaffoldMKVA00000000SAMN05660595
67-54
GCA_001724185.1ScaffoldMEDU00000000SAMN03652440
-
GCA_001898145.1ScaffoldMKSR00000000SAMN05660534
50-39
GCA_001899125.1ScaffoldMKVC00000000SAMN05660597
37-18
GCA_001898735.1ScaffoldMKVD00000000SAMN05660598
56-7
GCA_001724215.1ScaffoldMEDW00000000SAMN03652442
-
GCA_001724195.1ScaffoldMEDV00000000SAMN03652441
-
GCA_001899145.1ScaffoldMKVF00000000SAMN05660600
40-80
GCA_001899155.1ScaffoldMKVG00000000SAMN05660601
38-13
GCA_001898245.1ScaffoldMKTM00000000SAMN05660555
40-81
GCA_001724245.1ScaffoldMEDX00000000SAMN03652443
-
GCA_001898235.1ScaffoldMKTN00000000SAMN05660556
39-13
GCA_001724275.1ScaffoldMEDZ00000000SAMN03652445
-
GCA_001725305.1ScaffoldMEFW00000000SAMN03652499
-
GCA_001897365.1ScaffoldMKSS00000000SAMN05660535
70-12
GCA_001724835.1ScaffoldMEEA00000000SAMN03652446
-
GCA_001724295.1ScaffoldMEEB00000000SAMN03652447
-
GCA_001724045.1ScaffoldMEDI00000000SAMN03652428
-
GCA_001725315.1ScaffoldMEFX00000000SAMN03652500
-
GCA_001724855.1ContigMEED00000000SAMN03652449
-
GCA_001724315.1ScaffoldMEEC00000000SAMN03652448
-
GCA_001897665.1ContigMKTO00000000SAMN05660557
39-23
GCA_001899505.1ScaffoldMKVI00000000SAMN05660603
40-6
GCA_001898805.1ScaffoldMKVJ00000000SAMN05660604
71-9
GCA_001725325.1ContigMEFY00000000SAMN03652501
-
GCA_001725645.1ContigMEFO00000000SAMN03652491
-
GCA_001725595.1ScaffoldMEGS00000000SAMN03652523
-
GCA_001725155.1ContigMEFP00000000SAMN03652492
-
GCA_001725175.1ScaffoldMEFQ00000000SAMN03652493
-
GCA_001899855.1ScaffoldMKWR00000000SAMN05660638
63-13
GCA_001899805.1ScaffoldMKWP00000000SAMN05660636
66-474
GCA_001899845.1ScaffoldMKWQ00000000SAMN05660637
69-70
GCA_001898825.1ContigMKVK00000000SAMN05660605
64-120
GCA_001897075.1ScaffoldMKRZ00000000SAMN05660516
61-13
GCA_001899205.1ScaffoldMKVL00000000SAMN05660606
65-26
GCA_001724345.1ScaffoldMEEE00000000SAMN03652451
-
GCA_001724355.1ScaffoldMEEF00000000SAMN03652452
-
GCA_001724885.1ScaffoldMEEG00000000SAMN03652453
-
GCA_001898325.1ScaffoldMKTR00000000SAMN05660560
67-17
GCA_001897945.1ScaffoldMKRT00000000SAMN05660510
69-10
GCA_001897985.1ScaffoldMKRU00000000SAMN05660511
69-7
GCA_001898315.1ScaffoldMKTQ00000000SAMN05660559
70-16
GCA_001897105.1ScaffoldMKSA00000000SAMN05660517
70-38
GCA_001897265.1ScaffoldMKSL00000000SAMN05660528
71-23
GCA_001898305.1ScaffoldMKTP00000000SAMN05660558
71-36
GCA_001724435.1ContigMEEL00000000SAMN03652458
-
GCA_001725685.1ScaffoldMEFZ00000000SAMN03652502
-
GCA_001724385.1ScaffoldMEEI00000000SAMN03652455
-
GCA_001724395.1ContigMEEJ00000000SAMN03652456
-
GCA_001724425.1ScaffoldMEEK00000000SAMN03652457
-
GCA_001724905.1ScaffoldMEEH00000000SAMN03652454
-
GCA_001725695.1ScaffoldMEGA00000000SAMN03652503
-
GCA_001898905.1ScaffoldMKVP00000000SAMN05660610
70-64
GCA_001898835.1ScaffoldMKVM00000000SAMN05660607
72-143
GCA_001898855.1ScaffoldMKVN00000000SAMN05660608
73-13
GCA_001898885.1ScaffoldMKVO00000000SAMN05660609
73-15
GCA_001898335.1ScaffoldMKTS00000000SAMN05660561
44-25
GCA_001899635.1ScaffoldMKVQ00000000SAMN05660611
68-20
GCA_001724455.1ScaffoldMEEM00000000SAMN03652461
-
GCA_001724485.1ScaffoldMEEN00000000SAMN03652462
-
GCA_001896955.1ScaffoldMKRN00000000SAMN05660504
62-13
GCA_001897285.1ScaffoldMKSM00000000SAMN05660529
62-23
GCA_001724915.1ScaffoldMEEO00000000SAMN03652463
-
GCA_001899235.1ScaffoldMKVR00000000SAMN05660612
56-18
GCA_001724505.1ScaffoldMEEP00000000SAMN03652464
-
GCA_001898925.1ScaffoldMKVS00000000SAMN05660613
63-713
GCA_001725345.1ScaffoldMEGC00000000SAMN03652505
-
GCA_001725355.1ScaffoldMEGD00000000SAMN03652506
-
GCA_001898935.1ContigMKVT00000000SAMN05660614
47-17
GCA_001724935.1ScaffoldMEER00000000SAMN03652467
-
GCA_001725755.1ScaffoldMEGE00000000SAMN03652508
-
GCA_001899225.1ScaffoldMKVU00000000SAMN05660615
64-18
GCA_001724535.1ContigMEES00000000SAMN03652468
-
GCA_001724555.1ContigMEET00000000SAMN03652469
-
GCA_001725405.1ScaffoldMEGG00000000SAMN03652510
-
GCA_001724575.1ContigMEEU00000000SAMN03652470
-
GCA_001724955.1ScaffoldMEEV00000000SAMN03652471
-
GCA_001725395.1ScaffoldMEGF00000000SAMN03652509
-
GCA_001724985.1ScaffoldMEEW00000000SAMN03652472
-
GCA_001724605.1ContigMEEX00000000SAMN03652473
-
GCA_001898385.1ScaffoldMKTT00000000SAMN05660562
71-10
GCA_001724615.1ScaffoldMEEY00000000SAMN03652474
-
GCA_001899645.1ScaffoldMKVV00000000SAMN05660616
73-21
GCA_001725125.1ScaffoldMEEZ00000000SAMN03652475
-
GCA_001724645.1ContigMEFA00000000SAMN03652476
-
GCA_001725415.1ScaffoldMEGH00000000SAMN03652511
-
GCA_001724265.1ScaffoldMEDY00000000SAMN03652444
-
GCA_001898965.1ScaffoldMKVW00000000SAMN05660617
62-17
GCA_001899255.1ScaffoldMKVX00000000SAMN05660618
62-47
GCA_001898995.1ScaffoldMKVZ00000000SAMN05660620
63-22
GCA_001897115.1ScaffoldMKSB00000000SAMN05660518
63-7
GCA_001899285.1ScaffoldMKWA00000000SAMN05660621
64-17
GCA_001896885.1ScaffoldMKRJ00000000SAMN05660500
65-79
GCA_001899525.1ScaffoldMKVY00000000SAMN05660619
65-9
GCA_001897005.1ScaffoldMKRQ00000000SAMN05660507
68-8
GCA_001899545.1ScaffoldMKWB00000000SAMN05660622
60-20
GCA_001896825.1ScaffoldMKRF00000000SAMN05660496
63-7
GCA_001898415.1ScaffoldMKTU00000000SAMN05660563
67-28
GCA_001899565.1ScaffoldMKWC00000000SAMN05660623
68-29
GCA_001725445.1ContigMEGI00000000SAMN03652512
-
GCA_001725765.1ScaffoldMEGK00000000SAMN03652514
-
GCA_001724655.1ContigMEFB00000000SAMN03652477
-
GCA_001725485.1ScaffoldMEGL00000000SAMN03652515
-
GCA_001725465.1ScaffoldMEGJ00000000SAMN03652513
-
GCA_001898985.1ScaffoldMKWD00000000SAMN05660624
65-51
GCA_001898425.1ScaffoldMKTV00000000SAMN05660564
69-11
GCA_001899585.1ScaffoldMKWE00000000SAMN05660625
70-18
GCA_001724675.1ScaffoldMEFC00000000SAMN03652478
-
GCA_001725505.1ScaffoldMEGM00000000SAMN03652516
-
GCA_001724995.1ContigMEFD00000000SAMN03652479
-
GCA_001898065.1ScaffoldMKSC00000000SAMN05660519
65-6
GCA_001897355.1ScaffoldMKST00000000SAMN05660536
67-14
GCA_001898095.1ScaffoldMKSH00000000SAMN05660524
70-9
GCA_001898465.1ScaffoldMKTX00000000SAMN05660566
39-19
GCA_001899605.1ScaffoldMKWF00000000SAMN05660626
40-81
GCA_001896965.1ScaffoldMKRO00000000SAMN05660505
41-5
GCA_001899685.1ScaffoldMKWG00000000SAMN05660627
44-15
GCA_001898405.1ScaffoldMKTW00000000SAMN05660565
44-61
GCA_001898485.1ContigMKTY00000000SAMN05660567
46-32
GCA_001898495.1ScaffoldMKUA00000000SAMN05660569
48-107
GCA_001898505.1ScaffoldMKTZ00000000SAMN05660568
50-39
GCA_001724695.1ScaffoldMEFE00000000SAMN03652480
-
GCA_001899705.1ScaffoldMKWH00000000SAMN05660628
40-24
GCA_001899715.1ScaffoldMKWI00000000SAMN05660629
66-54
GCA_001725025.1ScaffoldMEFF00000000SAMN03652481
-
GCA_001898545.1ScaffoldMKUB00000000SAMN05660570
63-6
GCA_001897045.1ScaffoldMKRR00000000SAMN05660508
66-10
GCA_001897375.1ScaffoldMKSU00000000SAMN05660537
67-36
GCA_001899725.1ScaffoldMKWJ00000000SAMN05660630
67-41
GCA_001724715.1ScaffoldMEFG00000000SAMN03652482
-
GCA_001898555.1ScaffoldMKUC00000000SAMN05660571
65-8
GCA_001725095.1ScaffoldMEFH00000000SAMN03652483
-
GCA_001898575.1ScaffoldMKUD00000000SAMN05660572
48-14
GCA_001899865.1ScaffoldMKWK00000000SAMN05660631
69-14
GCA_001899305.1ScaffoldMKWL00000000SAMN05660632
0-1251
GCA_001899765.1ScaffoldMKWM00000000SAMN05660633
63-78
GCA_001897675.1ScaffoldMKUE00000000SAMN05660573
65-1059
GCA_001897685.1ScaffoldMKUG00000000SAMN05660575
65-1402
GCA_001899775.1ScaffoldMKWN00000000SAMN05660634
65-29
GCA_001897705.1ScaffoldMKUF00000000SAMN05660574
65-69
GCA_001725615.1ContigMEFL00000000SAMN03652488
-
GCA_001724735.1ScaffoldMEFI00000000SAMN03652484
-
GCA_001725135.1ContigMEFK00000000SAMN03652487
-
GCA_001725555.1ScaffoldMEGP00000000SAMN03652519
-
GCA_001725535.1ScaffoldMEGO00000000SAMN03652518
-
GCA_001724775.1ContigMEFJ00000000SAMN03652486
-
GCA_001725525.1ScaffoldMEGN00000000SAMN03652517
-
GCA_001725585.1ScaffoldMEGQ00000000SAMN03652520
-
GCA_001899795.1ScaffoldMKWO00000000SAMN05660635
67-131
GCA_001725775.1ScaffoldMEGR00000000SAMN03652521
-
GCA_001725035.1ContigMEFM00000000SAMN03652489
-
GCA_001897195.1ScaffoldMKSI00000000SAMN05660525
61-8
GCA_001725055.1ScaffoldMEFN00000000SAMN03652490
-
GCA_001725715.1ScaffoldMEGB00000000SAMN03652504
-
GCA_001724515.1ScaffoldMEEQ00000000SAMN03652465
-
SRA Data Details
ParameterValue
Data volume, Gbases339
Data volume, Tbytes0.22

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center