RNA-sequencing of the female adult fly guts from 3... (ID 484700) - BioProject

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Accession: PRJNA484700 ID: 484700

RNA-sequencing of the female adult fly guts from 38 DGRP lines with and without oral infection with Pseudomonas entomophila (fruit fly)

See Genome Information for Drosophila melanogaster

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This project is a component of the Enteric infection induces extensive Lark-mediated 5' retention of exon-like introns in Drosophila

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3 additional projects are components of the Enteric infection induces extensive Lark-mediated 5' retention of exon-like introns in Drosophila.

3916 additional projects are related by organism.

In order to gain insights into gut immunocompetence and its variation in a population, we performed RNA-sequencing of whole guts of 38 Drosophila Genetic Reference Panel strains. More...

Accession	PRJNA484700; GEO: GSE118142
Data Type	Transcriptome or Gene expression
Scope	Multiisolate
Organism	Drosophila melanogaster[Taxonomy ID: 7227] Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora; Drosophila melanogaster
Publications	Frochaux MV et al., "cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel.", Genome Biol, 2020 Jan 17;21(1):6 Bou Sleiman M et al., "Enteric infection induces Lark-mediated intron retention at the 5' end of Drosophila genes.", Genome Biol, 2020 Jan 17;21(1):4
Submission	Registration date: 6-Aug-2018 LISP, IBI, EPFL
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	76
Publications
PubMed	2
PMC	2
Other datasets
BioSample	76
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	2

SRA Data Details

Parameter	Value
Data volume, Gbases	154
Data volume, Mbytes	96025

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RNA-sequencing of the female adult fly guts from 38 DGRP lines with and without oral infection with Pseudomonas entomophila (fruit fly)

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