Drosophilidae (ID 1020440) - BioProject

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Accession: PRJNA1020440 ID: 1020440

Drosophilidae

Genome sequencing and assembly of many species of Family Drosophilidae Genome sequencing and assembly

This work is a collaborative project aiming to broaden the scope of genomic resources for studying evolution in Family Drosophilidae. More...

Accession	PRJNA1020440
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Kim BY et al., "Single-fly assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life.", bioRxiv, 2023 Oct 2;
Grants	"A comparative population genomic approach for high-resolution inference of natural selection in fruit flies" (Grant ID F32 GM135998, National Institute of General Medical Sciences) "Genomics of rapid adaptation in the lab and in the wild" (Grant ID R35 GM118165, National Institute of General Medical Sciences) "Drivers and consequences of introgression in evolution" (Grant ID R35 GM148244, National Institute of General Medical Sciences) "Investigator" (Grant ID HHMI_Eisen_M, Howard Hughes Medical Institute)
Submission	Registration date: 23-Sep-2023 Stanford University
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	181
SRA Experiments	344
Publications
PubMed	1
PMC	1
Other datasets
BioSample	183
Assembly	181

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

49
132
181

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_037040105.1	JBANCV000000000	SAMN37596579	Aalb_MT110	Amiota albilabris
GCA_037043315.1	JBAMAV000000000	SAMN37596569	Acom_TW22	Amiota communis
GCA_035041805.1	JAWNKV000000000	SAMN37596568	Amar_TW22	Amiota mariae
GCA_037043295.1	JBAMAW000000000	SAMN37596516	Amin_TW22	Amiota minor
GCA_035041755.1	JAWNKX000000000	SAMN37596573	CxInd_DO22-2	Cacoxenus indagator
GCA_037043725.1	JBAMAY000000000	SAMN37596490	CxInd_DO22-1	Cacoxenus indagator
GCA_037043745.1	JBAMAX000000000	SAMN37596463	Camo_TW21	Chymomyza amoena
GCA_035041775.1	JAWNKW000000000	SAMN37596574	Ccau_DO	Chymomyza caudatula
GCA_035046065.1	JAWNOJ000000000	SAMN37596415	20000-2631.01	Chymomyza procnemis
GCA_035078785.1	JAWNPV000000000	SAMN37596588	Ckir_MT79	Collessia kirishimana
GCA_037040085.1	JBANCW000000000	SAMN37596582	Ckot_MT6	Colocasiomyia kotana
GCA_037040065.1	JBANCX000000000	SAMN37596592	Deni_MT38	Dettopsomyia nigrovittata
GCA_035078745.1	JAWNPW000000000	SAMN37596581	DIuss_MT91	Diastata ussurica
GCA_037075225.1	JBAMCN000000000	SAMN37596585	Dlnd_MT57	Dichaetophora lindae
GCA_035046005.1	JAWNOK000000000	SAMN37596425	acutilabella_AK	Drosophila acutilabella
GCA_035045985.1	JAWNOL000000000	SAMN37596410	14012-0141.00	Drosophila affinis
GCA_035045965.1	JAWNOM000000000	SAMN37596441	15081-1251.22	Drosophila aldrichi
GCA_035041765.1	JAWNKY000000000	SAMN37596462	Dalg_TW21	Drosophila algonquin
GCA_035045945.1	JAWNON000000000	SAMN37596442	15081-1261.02	Drosophila anceps
GCA_035046425.1	JAWNNY000000000	SAMN37596502	14024-0461.00	Drosophila anomalata
GCA_035041615.1	JAWNKZ000000000	SAMN37596563	Danp_SHC-C171	Drosophila anomalipes
GCA_035045905.1	JAWNOO000000000	SAMN37596446	Dano_JD	Drosophila anomelani
GCA_035045925.1	JAWNOP000000000	SAMN37596429	V251	Drosophila atripex
GCA_035041605.1	JAWNLA000000000	SAMN37596559	Dasc_SHC-C168	Drosophila atroscutellata
GCA_035045865.1	JAWNOQ000000000	SAMN37596435	14045-0881.00	Drosophila austrosaltans
GCA_035041595.1	JAWNLB000000000	SAMN37596551	Dbas_SHC-C021	Drosophila basisetae
GCA_035046375.1	JAWNNZ000000000	SAMN37596500	14023-0361.09	Drosophila biarmipes
GCA_035046345.1	JAWNOA000000000	SAMN37596503	DM11	Drosophila birchii
GCA_035045885.1	JAWNOR000000000	SAMN37596413	15010-0961.00	Drosophila borealis
GCA_035046265.1	JAWNOB000000000	SAMN37596507	KLE 127	Drosophila bunnanda
GCA_035045845.1	JAWNOS000000000	SAMN37596443	15081-1291.02	Drosophila buzzatii
GCA_035041535.1	JAWNLC000000000	SAMN37596528	Dcog_SHC-C074	Drosophila cognata
GCA_035041545.1	JAWNLD000000000	SAMN37596489	Dcol_TW22-3	Drosophila colorata
GCA_035041375.1	JAWNLE000000000	SAMN37596537	Dcnf_SHC-C065	Drosophila conformis
GCA_035042505.1	JAWNLF000000000	SAMN37596534	Dcrc_SHC-C082	Drosophila cracens
GCA_035041335.1	JAWNLG000000000	SAMN37596483	Dcru_DKP	Drosophila crucigera
GCA_035042485.1	JAWNLH000000000	SAMN37596474	Dcyr_DKP	Drosophila cyrtoloma
GCA_035042405.1	JAWNLI000000000	SAMN37596542	Ddem_SHC-C151	Drosophila demipolita
GCA_037043665.1	JBAMAZ000000000	SAMN37596476	Ddif_DKP	Drosophila differens
GCA_035042365.1	JAWNLJ000000000	SAMN37596546	Ddiv_SHC-C142	Drosophila dives
GCA_037075365.1	JBAMCD000000000	SAMN37596449	14042-0841.09	Drosophila emarginata
GCA_035042385.1	JAWNLK000000000	SAMN37596481	Deng_DKP	Drosophila engyochracea
GCA_035045825.1	JAWNOT000000000	SAMN37596452	15085-1631.01	Drosophila eohydei
GCA_035045725.1	JAWNOU000000000	SAMN37596421	Dezo_MK-OJ8	Drosophila ezoana
GCA_035045575.1	JAWNOV000000000	SAMN37596439	D.falleni_G1#5	Drosophila falleni
GCA_035042425.1	JAWNLL000000000	SAMN37596494	Dfpi_TW22	Drosophila flavopinicola
GCA_035045625.1	JAWNOW000000000	SAMN37596454	15111-1721.00	Drosophila formosana
GCA_035045555.1	JAWNOX000000000	SAMN37596447	15084-1571.04	Drosophila fulvimacula
GCA_035042345.1	JAWNLM000000000	SAMN37596545	Dfug_SHC-C036	Drosophila fungiperda
GCA_035045545.1	JAWNOY000000000	SAMN37596411	15070-1231.03	Drosophila gaucha
GCA_035042305.1	JAWNLN000000000	SAMN37596564	Dgla_SHC-C181	Drosophila glabriapex
GCA_035045485.1	JAWNOZ000000000	SAMN37596422	gunungcola_AK-MK	Drosophila gunungcola
GCA_035045345.1	JAWNPA000000000	SAMN37596456	15081-1301.08	Drosophila hamatofila
GCA_037043685.1	JBAMBA000000000	SAMN37596480	Dhaw_DKP	Drosophila hawaiiensis
GCA_037043705.1	JBAMBB000000000	SAMN37596464	Dhel_DO21	Drosophila helvetica
GCA_035042245.1	JAWNLO000000000	SAMN37596511	Dhet_DKP	Drosophila heteroneura
GCA_037043635.1	JBAMBC000000000	SAMN37596491	Dhis_DO	Drosophila histrio
GCA_035042265.1	JAWNLP000000000	SAMN37596531	Dimp_SHC-C096	Drosophila imparisetae
GCA_035042225.1	JAWNLQ000000000	SAMN37596538	Dicg_SHC-C104	Drosophila incognita
GCA_035042205.1	JAWNLR000000000	SAMN37596547	Dinf_SHC-C099	Drosophila infuscata
GCA_035042185.1	JAWNLS000000000	SAMN37596548	Dkam_SHC-C100	Drosophila kambysellisi
GCA_037075305.1	JBAMCE000000000	SAMN37596434	Dkan_CRE	Drosophila kanekoi
GCA_035042145.1	JAWNLT000000000	SAMN37596560	Dkok_SHC-C184	Drosophila kokeensis
GCA_035042165.1	JAWNLU000000000	SAMN37596468	Dkun_DO21	Drosophila kuntzei
GCA_035045355.1	JAWNPB000000000	SAMN37596438	15010-0991.12	Drosophila lacicola
GCA_035045365.1	JAWNPC000000000	SAMN37596445	15081-1395.01	Drosophila leonis
GCA_035042125.1	JAWNLV000000000	SAMN37596544	Dlon_SHC-C139	Drosophila longiperda
GCA_037075285.1	JBAMCF000000000	SAMN37596451	14022-0271.00	Drosophila lutescens
GCA_035042075.1	JAWNLW000000000	SAMN37596471	Dmax_TW21	Drosophila macrospina
GCA_035042055.1	JAWNLX000000000	SAMN37596567	Dmac_SHC-C051	Drosophila macrothrix
GCA_035045305.1	JAWNPD000000000	SAMN37596432	Dmct_TK	Drosophila maculinotata
GCA_037075325.1	JBAMCG000000000	SAMN37596436	15081-1397.00	Drosophila mayaguana
GCA_037043625.1	JBAMBD000000000	SAMN37596475	Dmln_DKP	Drosophila melanocephala
GCA_037075385.1	JBAMCB000000000	SAMN37596497	14021-0231.36	Drosophila melanogaster
GCA_035042045.1	JAWNLY000000000	SAMN37596561	Dmls_SHC-C174	Drosophila melanosoma
GCA_035042065.1	JAWNLZ000000000	SAMN37596562	Dmls_SHC-C177	Drosophila melanosoma
GCA_035045175.1	JAWNPE000000000	SAMN37596414	15082-1511.00	Drosophila mercatorum
GCA_035045185.1	JAWNPF000000000	SAMN37596417	15081-1331.00	Drosophila meridiana
GCA_035045145.1	JAWNPG000000000	SAMN37596448	15081-1344.00	Drosophila meridionalis
GCA_035047645.1	JAWNPH000000000	SAMN37596423	merina_AK-JD	Drosophila merina
GCA_035047625.1	JAWNPI000000000	SAMN37596444	15081-1502.00	Drosophila mettleri
GCA_037075245.1	JBAMCH000000000	SAMN37596428	mimetica_AK	Drosophila mimetica
GCA_037043585.1	JBAMBE000000000	SAMN37596549	Dmic_SHC-C044	Drosophila mimica
GCA_035044445.1	JAWNMA000000000	SAMN37596492	Dmir_TW22	Drosophila miranda
GCA_035047585.1	JAWNPJ000000000	SAMN37596424	monieri_AK-JD	Drosophila monieri
GCA_035044405.1	JAWNMB000000000	SAMN37596575	Dmon_TW-CO22-7	Drosophila montana
GCA_035044425.1	JAWNMC000000000	SAMN37596495	Dmon_MK-O21	Drosophila montana
GCA_035047565.1	JAWNPK000000000	SAMN37596412	15081-1331.00	Drosophila mulleri
GCA_037043605.1	JBAMBF000000000	SAMN37596543	Dmlt_SHC-C078	Drosophila multiciliata
GCA_037043555.1	JBAMBG000000000	SAMN37596510	Dnpe_DKP	Drosophila neoperkinsi
GCA_035044365.1	JAWNMD000000000	SAMN37596488	Dnet_TW22	Drosophila neotestacea
GCA_035044385.1	JAWNME000000000	SAMN37596539	Dneu_SHC-C107	Drosophila neutralis
GCA_037075265.1	JBAMCI000000000	SAMN37596453	15081-1381.06	Drosophila nigricruria
GCA_035044305.1	JAWNMF000000000	SAMN37596532	Dnit_SHC-C060	Drosophila nigritarsus
GCA_035046325.1	JAWNOC000000000	SAMN37596504	DS 71	Drosophila niveifrons
GCA_035044245.1	JAWNMG000000000	SAMN37596535	Dnrfun_SHC-C102	Drosophila nr. fundita
GCA_035044325.1	JAWNMH000000000	SAMN37596533	Dnrmed2_SHC-C101	Drosophila nr. medialis 2 BK-2023a
GCA_035044225.1	JAWNMI000000000	SAMN37596486	Dnrmed3_DKP	Drosophila nr. medialis 3 BK-2023a
GCA_035044165.1	JAWNMJ000000000	SAMN37596557	Dnrprs1_SHC-C186	Drosophila nr. perissopoda 1 BK-2023a
GCA_035044105.1	JAWNMK000000000	SAMN37596558	Dnrprs5_SHC-C167	Drosophila nr. perissopoda 5 BK-2023a
GCA_035044065.1	JAWNMM000000000	SAMN37596478	Doch_DKP	Drosophila ochracea
GCA_035044125.1	JAWNML000000000	SAMN37596550	Doch_SHC-C070	Drosophila ochracea
GCA_035044025.1	JAWNMN000000000	SAMN37596536	Dpcn_SHC-C089	Drosophila paracracens
GCA_035043915.1	JAWNMO000000000	SAMN37596472	Dpam_TW21	Drosophila paramelanica
GCA_035047545.1	JAWNPL000000000	SAMN37596416	15082-1541.00	Drosophila paranaensis
GCA_035047505.1	JAWNPM000000000	SAMN37596455	15181-2221.03	Drosophila parthenogenetica
GCA_035043875.1	JAWNMP000000000	SAMN37596496	Dppn_DKP	Drosophila paucipuncta
GCA_035046225.1	JAWNOD000000000	SAMN37596498	15081-1398.11	Drosophila pegasa
GCA_035047485.1	JAWNPN000000000	SAMN37596420	15081-1401.00	Drosophila peninsularis
GCA_035043855.1	JAWNMQ000000000	SAMN37596540	Dpes_SHC-C008	Drosophila percnosoma
GCA_037043515.1	JBAMBH000000000	SAMN37596465	Dpha_DO21	Drosophila phalerata
GCA_035043845.1	JAWNMR000000000	SAMN37596565	Dpic_SHC-C172	Drosophila picticornis
GCA_035043785.1	JAWNMS000000000	SAMN37596479	Dpla_DKP	Drosophila planitibia
GCA_037075205.1	JBAMCJ000000000	SAMN37596450	14022-0291.00	Drosophila prostipennis
GCA_035046095.1	JAWNOE000000000	SAMN37596505	PH 171	Drosophila pseudotakahashii
GCA_037075185.1	JBAMCK000000000	SAMN37596419	15040-1191.00	Drosophila pseudotalamancana
GCA_035043795.1	JAWNMT000000000	SAMN37596482	Dpul_DKP	Drosophila pullipes
GCA_037043535.1	JBAMBI000000000	SAMN37596467	Dput_TW21	Drosophila putrida
GCA_035043665.1	JAWNMU000000000	SAMN37596485	Dqus_DKP	Drosophila quasianomalipes
GCA_035047525.1	JAWNPO000000000	SAMN37596457	Dqui_CRE	Drosophila quinaria
GCA_037043495.1	JBAMBJ000000000	SAMN37596493	Drec_TW22	Drosophila recens
GCA_035043635.1	JAWNMV000000000	SAMN37596514	Drll_TW22	Drosophila rellima
GCA_037075345.1	JBAMCC000000000	SAMN37596499	15084-1611.06	Drosophila repleta
GCA_035043565.1	JAWNMW000000000	SAMN37596470	Drob_TW21	Drosophila robusta
GCA_035046165.1	JAWNOF000000000	SAMN37596506	PH 161	Drosophila rubida
GCA_035043575.1	JAWNMX000000000	SAMN37596529	Dscl_SHC-C011	Drosophila seclusa
GCA_035046125.1	JAWNOG000000000	SAMN37596508	PLE 108	Drosophila serrata
GCA_035043505.1	JAWNMY000000000	SAMN37596566	Dset_SHC-C195	Drosophila setosimentum
GCA_035047445.1	JAWNPP000000000	SAMN37596426	15111-1741.00	Drosophila siamana
GCA_035043445.1	JAWNMZ000000000	SAMN37596484	Dsil_DKP	Drosophila silvestris
GCA_035043295.1	JAWNNA000000000	SAMN37596541	Dsrd_SHC-C027	Drosophila sordidapex
GCA_035047465.1	JAWNPQ000000000	SAMN37596458	15020-1121.01	Drosophila sordidula
GCA_035047405.1	JAWNPR000000000	SAMN37596440	15081-1451.00	Drosophila stalkeri
GCA_037043435.1	JBAMBK000000000	SAMN37596515	Dsuo_TW22	Drosophila suboccidentalis
GCA_037043405.1	JBAMBL000000000	SAMN37596513	Dsqu_TW22	Drosophila subquinaria
GCA_035043285.1	JAWNNB000000000	SAMN37596459	Dsus_DO21	Drosophila subsilvestris
GCA_035043275.1	JAWNNC000000000	SAMN37596469	Dtan_DKP	Drosophila tanythrix
GCA_035043265.1	JAWNND000000000	SAMN37596461	Dtes_DO21	Drosophila testacea
GCA_035043205.1	JAWNNE000000000	SAMN37596530	Dtch_SHC-C086	Drosophila trichaetosa
GCA_035047385.1	JAWNPS000000000	SAMN37596431	A5-2b1 F7-b1b	Drosophila tripunctata
GCA_035047365.1	JAWNPT000000000	SAMN37596427	MTK	Drosophila ustulata
GCA_035047325.1	JAWNPU000000000	SAMN37596430	vallismaia_AK-JD	Drosophila vallismaia
GCA_035043025.1	JAWNNF000000000	SAMN37596477	Dvil_DKP	Drosophila villosipedis
GCA_035046025.1	JAWNOH000000000	SAMN37596501	14021-0261.01	Drosophila yakuba
GCA_035043035.1	JAWNNG000000000	SAMN37596473	Dyoo_DKP	Drosophila yooni
GCA_035043045.1	JAWNNH000000000	SAMN37596525	Halb_MT24	Hirtodrosophila alboralis
GCA_037075125.1	JBAMCO000000000	SAMN37596583	Hcap_MT172	Hirtodrosophila caputudis
GCA_035043065.1	JAWNNI000000000	SAMN37596460	Hcon_DO21	Hirtodrosophila confusa
GCA_037043425.1	JBAMBM000000000	SAMN37596466	Hdun_TW21	Hirtodrosophila duncani
GCA_037075165.1	JBAMCL000000000	SAMN37596433	Hhis_TK	Hirtodrosophila histrioides
GCA_035078685.1	JAWNPX000000000	SAMN37596580	Huok_MT27	Hirtodrosophila nokogiri
GCA_035045065.1	JAWNNK000000000	SAMN37596487	Htri_DO	Hirtodrosophila trivittata
GCA_035045125.1	JAWNNJ000000000	SAMN37596522	Hgut_MT124	Hypselothyrea guttata
GCA_035044805.1	JAWNNP000000000	SAMN37596571	Lmac_DO	Leucophenga maculata
GCA_035044765.1	JAWNNQ000000000	SAMN37596570	Lmon_TW-CO22-6	Leucophenga montana
GCA_037043415.1	JBAMBN000000000	SAMN37596576	Laer_TM23	Liodrosophila aerea
GCA_035045005.1	JAWNNL000000000	SAMN37596523	Laer_MT83	Liodrosophila aerea
GCA_037075105.1	JBAMCP000000000	SAMN37596589	Lsab_MT150	Lissocephala sabroskyi
GCA_035044965.1	JAWNNM000000000	SAMN37596572	Land_DO	Lordiphosa andalusiaca
GCA_035044905.1	JAWNNN000000000	SAMN37596518	UCKTSapporo052019LC	Lordiphosa collinella
GCA_035044985.1	JAWNNO000000000	SAMN37596512	Lfen_DO	Lordiphosa fenestrarum
GCA_037044535.1	JBAMBO000000000	SAMN37596517	UCKTSapporo052019LM	Lordiphosa magnipectinata
GCA_037075075.1	JBAMCQ000000000	SAMN37596586	Mcri_MT41	Microdrosophila cristata
GCA_037075045.1	JBAMCR000000000	SAMN37596587	Mpar_MT130	Mulgravea parasiatica
GCA_037044515.1	JBAMBP000000000	SAMN37596524	Pmag_MT84	Phortica magna
GCA_037040045.1	JBANCY000000000	SAMN37596577	Pfla_MT158	Phorticella flavipennis
GCA_037075145.1	JBAMCM000000000	SAMN37596418	11030-0061.01	Scaptodrosophila latifasciaeformis
GCA_035078625.1	JAWNPY000000000	SAMN37596584	Ssca_MT71	Scaptodrosophila scaptomyzoidea
GCA_035044725.1	JAWNNR000000000	SAMN37596555	Scal_SHC-C164	Scaptomyza caliginosa
GCA_035044605.1	JAWNNS000000000	SAMN37596552	Scyr_SHC-C002	Scaptomyza cyrtandrae
GCA_035044645.1	JAWNNT000000000	SAMN37596556	Spar_SHC-C083	Scaptomyza parva
GCA_035044585.1	JAWNNU000000000	SAMN37596519	Spol_TM	Scaptomyza polygonia
GCA_035044485.1	JAWNNV000000000	SAMN37596554	Sred_SHC-C122	Scaptomyza reducta
GCA_035044465.1	JAWNNW000000000	SAMN37596553	Stum_SHC-C153	Scaptomyza tumidula
GCA_037040025.1	JBANCZ000000000	SAMN37596578	Sjav_MT119	Sphaerogastrella javana
GCA_037044495.1	JBAMBQ000000000	SAMN37596527	Snig_MT107	Stegana nigrithorax
GCA_035046045.1	JAWNOI000000000	SAMN37596509	PL 11	Zaprionus bogoriensis
GCA_035044505.1	JAWNNX000000000	SAMN37596590	Zlin_MT215	Zaprionus lineosus
GCA_037044475.1	JBAMBR000000000	SAMN37596521	Zobs_MT162	Zaprionus obscuricornis
GCA_037040005.1	JBANDA000000000	SAMN37596520	Zfla_MT450	Zygothrica flavofinira
GCA_037044455.1	JBAMBS000000000	SAMN37596526	Zqui_MT42	Zygothrica quintamaculata

SRA Data Details

Parameter	Value
Data volume, Gbases	3,191
Data volume, Tbytes	1.95

Related Project Category: RefseqGenbank

PRJNA1101958 : Drosophila montana RefSeq BioProject

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