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Links from Genome

Items: 1 to 20 of 47

1.

Distinct mechanisms of germ cell factor regulation for an inductive germ cell fate

Organism:
Patiria miniata
Taxonomy:
Patiria miniata (bat star)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biology, Cell Biology & Biochemistry, Brown University
Accession:
PRJNA806693
ID:
806693
2.

Base-resolution DNA methylation maps of purple sea urchin (Strongylocentrotus purpuratus)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Developmental Epigenomics, Genomics and Epigenetics, Garvan Institute
Accession:
PRJNA778394
ID:
778394
3.

Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organization

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Centro Andaluz de Biología del Desarrollo
Accession:
PRJNA773506
ID:
773506
4.

Global patterns of enhancer activity during sea urchin embryogenesis assessed by eRNA profiling

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Other
Scope:
Multiisolate
Ettensohn, Biological Sciences, Carnegie Mellon University
Accession:
PRJNA715756
ID:
715756
5.

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ATAC-Seq)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Biology, CSI CUNY
Accession:
PRJNA673239
ID:
673239
6.

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Biology, CSI CUNY
Accession:
PRJNA673238
ID:
673238
7.

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Other
Scope:
Multiisolate
Biology, CSI CUNY
Accession:
PRJNA673237
ID:
673237
8.

Regulation of dynamic pigment cell states at single-cell resolution

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Brown university
Accession:
PRJNA649738
ID:
649738
9.

A single cell RNA-seq resource for early sea urchin development

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biology, Cell Biology & Biochemistry, Brown University
Accession:
PRJNA627693
ID:
627693
10.

Single cell RNA‐seq in the sea urchin embryo show marked cell‐type specificity in the Delta/Notch pathway

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biology, Cell Biology & Biochemistry, Brown University
Accession:
PRJNA554833
ID:
554833
11.

Strongylocentrotus purpuratus

Epigenomics and transcriptomics of Stronglyocentrotus purpuratus in a transgenerational context

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of California Santa Barbara
Accession:
PRJNA548926
ID:
548926
12.

Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis

Organism:
Strongylocentrotus purpuratus
Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Ettensohn, Biological Sciences, Carnegie Mellon University
Accession:
PRJNA543356
ID:
543356
13.

Strongylocentrotus purpuratus

Strongylocentrotus purpuratus early transcriptome

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Humboldt University
Accession:
PRJNA531297
ID:
531297
14.

Strongylocentrotus purpuratus

Parental environments alter DNA methylation in offspring of the purple sea urchin, Strongylocentrotus purpuratus

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
University of California Santa Barbara
Accession:
PRJNA525826
ID:
525826
15.

Strongylocentrotus purpuratus

Moderate and extreme low-pH adaptive alleles revealed in a single generation selection experiment from standing genetic variation in the purple sea urchin, Strongylocentrotus purpuratus

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Variation
Scope:
Multiisolate
University of Vermont
Accession:
PRJNA479817
ID:
479817
16.

Strongylocentrotus purpuratus

Strongylocentrotus purpuratus Raw sequence reads

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Raw sequence reads
Scope:
Other
Liaoning Marine Fisheries Research Institute
Accession:
PRJNA445768
ID:
445768
17.

Strongylocentrotus purpuratus

Gene expression in tissues from an immune challenged adult sea urchin (Strongylocentrotus purpuratus)

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Biological Sciences, The George Washington University
Accession:
PRJNA381801
ID:
381801
18.

Strongylocentrotus purpuratus

The sea urchin larval response to immune challenge with Vibrio diazotrophicus

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Biological Sciences, The George Washington University
Accession:
PRJNA380184
ID:
380184
19.

Strongylocentrotus purpuratus

Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Epigenomics
Scope:
Multiisolate
Carnegie Mellon University
Accession:
PRJNA380123
ID:
380123
20.

Strongylocentrotus purpuratus

Strongylocentrotus purpuratus Raw sequence reads

Taxonomy:
Strongylocentrotus purpuratus (purple sea urchin)
Project data type: Raw sequence reads
Scope:
Multiisolate
University of California, Santa Barbara
Accession:
PRJNA378799
ID:
378799

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