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Links from Genome

Accession: PRJNA421191 ID: 421191

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
Genome sequencing of ETEC
AccessionPRJNA421191
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsHazen TH et al., "Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Escherichia coli Reveals Lineage and Geographic Variation.", mSystems, 2019 Jan-Feb;4(1)
Grants
  • "Host, Pathogen, and the Microbiome: Determinants of Infectious Disease Outcome" (Grant ID U19 AI110820, National Institute of Allergy and Infectious Diseases Extramural Activities)
SubmissionRegistration date: 28-Dec-2018
University of Maryland, School of Medicine
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)42371
WGS master216
Genomic DNA89
Publications
PubMed1
PMC1
Other datasets
BioSample238
Assembly241
Assembly details:
Assembly levelNumber of Assemblies
18
216
234
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_016767925.1Complete genomeSAMN08161307
503046
GCA_003956485.1Complete genomeSAMN08161259
120899
GCA_003956465.1Complete genomeSAMN08161306
503025
GCA_003956445.1Complete genomeSAMN08161308
503440
GCA_003956425.1Complete genomeSAMN08161312
504211
GCA_003956405.1Complete genomeSAMN08161195
504239
GCA_003956385.1Complete genomeSAMN08161317
600468
GCA_003956365.1Complete genomeSAMN08161318
602354
GCA_003956345.1Complete genomeSAMN08161340
720632
GCA_003956325.1Complete genomeSAMN08161256
103605
GCA_003956305.1Complete genomeSAMN08161146
300709
GCA_003956285.1Complete genomeSAMN08161311
503829
GCA_003956265.1Complete genomeSAMN08161314
510016
GCA_003956245.1Complete genomeSAMN08161344
214-4
GCA_003956225.1Complete genomeSAMN08161275
203740
GCA_003956205.1Complete genomeSAMN08161280
204446
GCA_003956185.1Complete genomeSAMN08161313
504237
GCA_003956165.1Complete genomeSAMN08161196
504838
GCA_003984585.1ContigPNXI00000000
SAMN08161108
100386
GCA_003984575.1ContigPNYN00000000
SAMN08161244
100324
GCA_003984505.1ContigPNXD00000000
SAMN08161112
100532
GCA_003984525.1ContigPNXG00000000
SAMN08161109
100485
GCA_003984485.1ContigPOAT00000000
SAMN08161252
100724
GCA_003984495.1ContigPNXC00000000
SAMN08161113
100575
GCA_003984475.1ContigPNXA00000000
SAMN08161251
100693
GCA_003984405.1ContigPNXK00000000
SAMN08161241
100045
GCA_003984445.1ContigPNXL00000000
SAMN08161107
100007
GCA_003984385.1ContigPNYL00000000
SAMN08161246
100421
GCA_003984375.1ContigPNYM00000000
SAMN08161245
100345
GCA_003984395.1ContigPNXJ00000000
SAMN08161243
100211
GCA_003984325.1ContigPNXH00000000
SAMN08161247
100477
GCA_003984295.1ContigPNXE00000000
SAMN08161111
100517
GCA_003984305.1ContigPNXF00000000
SAMN08161110
100516
GCA_003984285.1ContigPNYK00000000
SAMN08161248
100522
GCA_003984275.1ContigPOAV00000000
SAMN08161249
100563
GCA_003984255.1ContigPNXB00000000
SAMN08161114
100639
GCA_003984195.1ContigPNWZ00000000
SAMN08161115
102625
GCA_003984205.1ContigPOAU00000000
SAMN08161250
100640
GCA_003984175.1ContigPOAE00000000
SAMN08161253
102221
GCA_003984185.1ContigPNWY00000000
SAMN08161116
102658
GCA_003984145.1ContigPOAD00000000
SAMN08161117
102660
GCA_003984095.1ContigPNWN00000000
SAMN08161126
200332
GCA_003984105.1ContigPNWW00000000
SAMN08161119
102704
GCA_003984085.1ContigPNWM00000000
SAMN08161127
200393
GCA_003984075.1ContigPNWL00000000
SAMN08161128
200431
GCA_003984045.1ContigPNZX00000000
SAMN08161265
202550
GCA_003984025.1ContigPNZT00000000
SAMN08161273
202974
GCA_003983995.1ContigPNVX00000000
SAMN08161276
203802
GCA_003983975.1ContigPNVU00000000
SAMN08161135
203891
GCA_003983985.1ContigPNVY00000000
SAMN08161133
203520
GCA_003983945.1ContigPNVR00000000
SAMN08161279
204044
GCA_003983905.1ContigPNVJ00000000
SAMN08161143
300042
GCA_003983925.1ContigPNVK00000000
SAMN08161284
220075
GCA_003983885.1ContigPNVE00000000
SAMN08161286
302921
GCA_003983865.1ContigPNVD00000000
SAMN08161287
303227
GCA_003983855.1ContigPNZP00000000
SAMN08161288
310003
GCA_003983805.1ContigPNUY00000000
SAMN08161153
320116
GCA_003983815.1ContigPNVB00000000
SAMN08161150
310142
GCA_003983795.1ContigPNUU00000000
SAMN08161157
320308
GCA_003983775.1ContigPNUN00000000
SAMN08161165
400710
GCA_003983755.1ContigPNUM00000000
SAMN08161166
400818
GCA_003983725.1ContigPNUJ00000000
SAMN08161169
400926
GCA_003983695.1ContigPNUA00000000
SAMN08161297
402371
GCA_003983685.1ContigPNUB00000000
SAMN08161295
402216
GCA_003983675.1ContigPNZM00000000
SAMN08161179
402411
GCA_003983655.1ContigPOAN00000000
SAMN08161299
403030
GCA_003983615.1ContigPNTY00000000
SAMN08161180
403138
GCA_003983595.1ContigPNTX00000000
SAMN08161181
403182
GCA_003983585.1ContigPNTT00000000
SAMN08161184
403856
GCA_003983575.1ContigPNWX00000000
SAMN08161118
102689
GCA_003983535.1ContigPNWU00000000
SAMN08161121
102745
GCA_003983545.1ContigPNWV00000000
SAMN08161120
102706
GCA_003983465.1ContigPNWT00000000
SAMN08161122
103393
GCA_003983475.1ContigPOAC00000000
SAMN08161254
103503
GCA_003983455.1ContigPNWR00000000
SAMN08161257
103613
GCA_003983445.1ContigPOAA00000000
SAMN08161255
103522
GCA_003983435.1ContigPNWS00000000
SAMN08161123
103556
GCA_003983415.1ContigPNZZ00000000
SAMN08161258
120158
GCA_003983375.1ContigPNWQ00000000
SAMN08161124
120313
GCA_003983365.1ContigPNWP00000000
SAMN08161260
200065
GCA_003983345.1ContigPNWO00000000
SAMN08161125
200154
GCA_003983335.1ContigPNZY00000000
SAMN08161261
200434
GCA_003983315.1ContigPNWK00000000
SAMN08161129
200562
GCA_003983285.1ContigPNWJ00000000
SAMN08161130
200856
GCA_003983275.1ContigPNWI00000000
SAMN08161262
201329
GCA_003983245.1ContigPNWH00000000
SAMN08161263
201399
GCA_003983225.1ContigPNWG00000000
SAMN08161131
201439
GCA_003983215.1ContigPNWF00000000
SAMN08161264
202141
GCA_003983165.1ContigPNZW00000000
SAMN08161267
202580
GCA_003983175.1ContigPNWE00000000
SAMN08161266
202556
GCA_003983155.1ContigPNZV00000000
SAMN08161268
202702
GCA_003983125.1ContigPNWD00000000
SAMN08161269
202709
GCA_003983115.1ContigPNZU00000000
SAMN08161270
202733
GCA_003983075.1ContigPNWC00000000
SAMN08161271
202789
GCA_003983055.1ContigPNWB00000000
SAMN08161272
202942
GCA_003983065.1ContigPNWA00000000
SAMN08161132
203388
GCA_003983025.1ContigPNVZ00000000
SAMN08161274
203394
GCA_003983015.1ContigPNVW00000000
SAMN08161134
203854
GCA_003982995.1ContigPNVV00000000
SAMN08161277
203886
GCA_003982965.1ContigPNZS00000000
SAMN08161278
204009
GCA_003982945.1ContigPNVT00000000
SAMN08161136
204033
GCA_003982935.1ContigPNVS00000000
SAMN08161137
204041
GCA_003982905.1ContigPNVP00000000
SAMN08161139
204438
GCA_003982895.1ContigPNVQ00000000
SAMN08161138
204362
GCA_003982865.1ContigPNVN00000000
SAMN08161140
204553
GCA_003982855.1ContigPNVO00000000
SAMN08161281
204548
GCA_003982805.1ContigPNZR00000000
SAMN08161283
210056
GCA_003982775.1ContigPNVL00000000
SAMN08161142
220027
GCA_003982795.1ContigPNVM00000000
SAMN08161141
210088
GCA_003982765.1ContigPNZQ00000000
SAMN08161285
300241
GCA_003982755.1ContigPNVI00000000
SAMN08161144
300202
GCA_003982735.1ContigPNVH00000000
SAMN08161145
300252
GCA_003982655.1ContigPNVF00000000
SAMN08161148
302824
GCA_003982695.1ContigPNVG00000000
SAMN08161147
302005
GCA_003982675.1ContigPNVC00000000
SAMN08161149
310140
GCA_003982645.1ContigPNVA00000000
SAMN08161151
310190
GCA_003982635.1ContigPNUZ00000000
SAMN08161152
310202
GCA_003982575.1ContigPNUW00000000
SAMN08161155
320272
GCA_003982545.1ContigPNZO00000000
SAMN08161289
320321
GCA_003982585.1ContigPNUX00000000
SAMN08161154
320160
GCA_003982555.1ContigPNUV00000000
SAMN08161156
320277
GCA_003982535.1ContigPNUT00000000
SAMN08161158
320385
GCA_003982495.1ContigPNUS00000000
SAMN08161159
320397
GCA_003982475.1ContigPNUR00000000
SAMN08161161
320842
GCA_003982485.1ContigPOAS00000000
SAMN08161160
320430
GCA_003982445.1ContigPNUP00000000
SAMN08161163
400572
GCA_003982435.1ContigPNUQ00000000
SAMN08161162
400538
GCA_003982395.1ContigPNUO00000000
SAMN08161164
400578
GCA_003982365.1ContigPOAR00000000
SAMN08161290
400584
GCA_003982345.1ContigPNZN00000000
SAMN08161291
400834
GCA_003982355.1ContigPNUL00000000
SAMN08161167
400893
GCA_003982335.1ContigPNUK00000000
SAMN08161168
400903
GCA_003982235.1ContigPNZJ00000000
SAMN08161292
401715
GCA_003982265.1ContigPNUG00000000
SAMN08161172
401672
GCA_003982275.1ContigPNUI00000000
SAMN08161170
401248
GCA_003982245.1ContigPNZK00000000
SAMN08161293
401924
GCA_003982255.1ContigPNUH00000000
SAMN08161171
401629
GCA_003982175.1ContigPNUC00000000
SAMN08161294
402007
GCA_003982165.1ContigPOAQ00000000
SAMN08161174
401963
GCA_003982145.1ContigPNUD00000000
SAMN08161176
402001
GCA_003982135.1ContigPNUE00000000
SAMN08161175
401981
GCA_003982155.1ContigPNUF00000000
SAMN08161173
401949
GCA_003982065.1ContigPNZL00000000
SAMN08161296
402245
GCA_003982105.1ContigPOAP00000000
SAMN08161177
402329
GCA_003982045.1ContigPNTZ00000000
SAMN08161298
402747
GCA_003982055.1ContigPOAO00000000
SAMN08161178
402404
GCA_003982035.1ContigPNZI00000000
SAMN08161300
403047
GCA_003981975.1ContigPNZH00000000
SAMN08161301
403395
GCA_003981965.1ContigPNTU00000000
SAMN08161183
403692
GCA_003981955.1ContigPNTV00000000
SAMN08161302
403625
GCA_003981945.1ContigPNTW00000000
SAMN08161182
403406
GCA_003981935.1ContigPNTS00000000
SAMN08161185
410299
GCA_003981885.1ContigPNZG00000000
SAMN08161303
410343
GCA_003981855.1ContigPNTP00000000
SAMN08161188
500469
GCA_003981865.1ContigPNZF00000000
SAMN08161304
410519
GCA_003981845.1ContigPNTH00000000
SAMN08161198
510472
GCA_003981835.1ContigPNTN00000000
SAMN08161190
500691
GCA_003981775.1ContigPNTF00000000
SAMN08161200
520645
GCA_003981765.1ContigPNTB00000000
SAMN08161204
600486
GCA_003981755.1ContigPNSZ00000000
SAMN08161206
600780
GCA_003981735.1ContigPNSY00000000
SAMN08161207
600880
GCA_003981745.1ContigPNTA00000000
SAMN08161205
600609
GCA_003981675.1ContigPNZD00000000
SAMN08161319
603744
GCA_003981665.1ContigPOAL00000000
SAMN08161209
603626
GCA_003981655.1ContigPNZB00000000
SAMN08161210
610926
GCA_003981645.1ContigPNST00000000
SAMN08161322
700052
GCA_003981635.1ContigPNYY00000000
SAMN08161323
700179
GCA_003981565.1ContigPOSQ00000000
SAMN08161216
700384
GCA_003981575.1ContigPOAB00000000
SAMN08161324
700308
GCA_003981555.1ContigPNSR00000000
SAMN08161217
700387
GCA_003981535.1ContigPNYX00000000
SAMN08161327
700508
GCA_003981545.1ContigPOAK00000000
SAMN08161326
700500
GCA_003981485.1ContigPNSQ00000000
SAMN08161218
700590
GCA_003981475.1ContigPNSO00000000
SAMN08161329
702124
GCA_003981445.1ContigPNSK00000000
SAMN08161333
702582
GCA_003981455.1ContigPNYV00000000
SAMN08161220
702213
GCA_003981435.1ContigPNSH00000000
SAMN08161224
703359
GCA_003981385.1ContigPNSE00000000
SAMN08161337
710421
GCA_003981395.1ContigPNSG00000000
SAMN08161225
703417
GCA_003981345.1ContigPNRY00000000
SAMN08161231
710885
GCA_003981355.1ContigPNSC00000000
SAMN08161228
710469
GCA_003981335.1ContigPNRW00000000
SAMN08161233
720521
GCA_003981275.1ContigPNYR00000000
SAMN08161342
721040
GCA_003981285.1ContigPNYQ00000000
SAMN08161343
721119
GCA_003981245.1ContigPNRS00000000
SAMN08161238
721266
GCA_003981255.1ContigPNXM00000000
SAMN08161239
721280
GCA_003981235.1ContigPNTR00000000
SAMN08161186
410529
GCA_003981215.1ContigPNTQ00000000
SAMN08161187
410584
GCA_003981165.1ContigPNTO00000000
SAMN08161189
500669
GCA_003981135.1ContigPNTM00000000
SAMN08161191
501027
GCA_003981145.1ContigPNTL00000000
SAMN08161192
503287
GCA_003981155.1ContigPNTK00000000
SAMN08161193
503456
GCA_003981105.1ContigPNTJ00000000
SAMN08161194
504100
GCA_003981095.1ContigPNZE00000000
SAMN08161310
503606
GCA_003981055.1ContigPNTI00000000
SAMN08161197
504866
GCA_003981035.1ContigPOSR00000000
SAMN08161315
510242
GCA_003981045.1ContigPNTG00000000
SAMN08161199
520047
GCA_003980995.1ContigPNTD00000000
SAMN08161202
520892
GCA_003980985.1ContigPNTE00000000
SAMN08161201
520657
GCA_003980975.1ContigPNTC00000000
SAMN08161203
521034
GCA_003980945.1ContigPOAM00000000
SAMN08161208
602474
GCA_003980925.1ContigPNZC00000000
SAMN08161320
603766
GCA_003980905.1ContigPNSX00000000
SAMN08161211
620825
GCA_003980885.1ContigPNSW00000000
SAMN08161212
620828
GCA_003980875.1ContigPNSV00000000
SAMN08161213
620852
GCA_003980855.1ContigPNZA00000000
SAMN08161214
620972
GCA_003980805.1ContigPNSU00000000
SAMN08161215
621178
GCA_003980795.1ContigPNYZ00000000
SAMN08161321
700004
GCA_003980785.1ContigPNSS00000000
SAMN08161325
700329
GCA_003980775.1ContigPNYW00000000
SAMN08161328
700737
GCA_003980755.1ContigPNSP00000000
SAMN08161219
702052
GCA_003980705.1ContigPOAJ00000000
SAMN08161330
702193
GCA_003980695.1ContigPNSN00000000
SAMN08161221
702288
GCA_003980675.1ContigPNSM00000000
SAMN08161222
702375
GCA_003980665.1ContigPNYU00000000
SAMN08161331
702530
GCA_003980655.1ContigPNSL00000000
SAMN08161332
702551
GCA_003980635.1ContigPNSJ00000000
SAMN08161334
702782
GCA_003980595.1ContigPOAI00000000
SAMN08161335
702915
GCA_003980575.1ContigPNSI00000000
SAMN08161223
703184
GCA_003980565.1ContigPNYT00000000
SAMN08161336
703595
GCA_003980555.1ContigPNSF00000000
SAMN08161226
710296
GCA_003980525.1ContigPNSD00000000
SAMN08161227
710451
GCA_003980495.1ContigPNSB00000000
SAMN08161229
710499
GCA_003980485.1ContigPNSA00000000
SAMN08161338
710607
GCA_003980465.1ContigPNRZ00000000
SAMN08161230
710663
GCA_003980455.1ContigPNYS00000000
SAMN08161339
710667
GCA_003980425.1ContigPNRX00000000
SAMN08161232
710903
GCA_003980405.1ContigPOAH00000000
SAMN08161341
720828
GCA_003980385.1ContigPNRV00000000
SAMN08161234
721004
GCA_003980375.1ContigPNRU00000000
SAMN08161235
721042
GCA_003980355.1ContigPNYP00000000
SAMN08161236
721168
GCA_003980315.1ContigPNRT00000000
SAMN08161237
721249
GCA_003980305.1ContigPNRR00000000
SAMN08161240
TW10590
GCA_004001145.1ContigPNYO00000000
SAMN08161242
100047

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