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Accession: PRJNA351262 ID: 351262

halite metagenome

Halite metagenome Metagenomic assembly

Metagenomes from 26 salt crust samples taken along a fog gradient from the Salar Llamara in the hyperarid region of the Atacama Desert, Chile
AccessionPRJNA351262
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismhalite metagenome[Taxonomy ID: 1319833]
unclassified sequences; metagenomes; ecological metagenomes; halite metagenome
PublicationsFinstad KM et al., "Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.", Front Microbiol, 2017;8:1435
Grants
  • "DISSERTATION RESEARCH: Living on the Edge: Biodiversity and Metabolic Potential of Microbial Communities in Salt Crusts of the Hyperarid Atacama Desert" (Grant ID 1406956, National Science Foundation)
SubmissionRegistration date: 19-Mar-2018
None
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)23981
WGS master139
SRA Experiments27
Protein Sequences270349
Publications
PubMed1
PMC1
Other datasets
BioSample166
Assembly139
Assembly details:
Assembly levelNumber of Assemblies
138
1
139
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_003021645.1ScaffoldPXPG00000000SAMN06020719
QS_5_72_10
GCA_003021615.1ScaffoldPXPH00000000SAMN06020720
QS_8_72_14
GCA_003023125.1ScaffoldPXSY00000000SAMN06020815
QH_10_64_19
GCA_003023105.1ScaffoldPXSZ00000000SAMN06020816
QH_10_64_37
GCA_003022705.1ScaffoldPXSW00000000SAMN06020813
QH_1_61_8
GCA_003022655.1ScaffoldPXSX00000000SAMN06020814
QH_1_64_81
GCA_003022645.1ScaffoldPXTB00000000SAMN06020818
QH_2_63_10
GCA_003023145.1ScaffoldPXTC00000000SAMN06020819
QH_2_64_26
GCA_003023085.1ScaffoldPXTD00000000SAMN06020820
QH_2_64_74
GCA_003023385.1ScaffoldPXTA00000000SAMN06020817
QH_2_67_10
GCA_003022615.1ScaffoldPXTE00000000SAMN06020821
QH_6_63_17
GCA_003023065.1ScaffoldPXTF00000000SAMN06020822
QH_6_64_77
GCA_003023365.1ScaffoldPXTG00000000SAMN06020823
QH_7_62_13
GCA_003023045.1ScaffoldPXTH00000000SAMN06020824
QH_7_64_110
GCA_003022975.1ScaffoldPXTI00000000SAMN06020825
QH_8_67_23
GCA_003023345.1ScaffoldPXTK00000000SAMN06020827
QH_9_64_21
GCA_003022605.1ScaffoldPXTJ00000000SAMN06020826
QH_9_67_14
GCA_003023025.1ScaffoldPXTM00000000SAMN06020829
QS_1_63_11
GCA_003023315.1ScaffoldPXTL00000000SAMN06020828
QS_1_65_9
GCA_003022565.1ScaffoldPXTN00000000SAMN06020830
QS_3_64_15
GCA_003023265.1ScaffoldPXTO00000000SAMN06020831
QS_4_64_154
GCA_003022585.1ScaffoldPXTP00000000SAMN06020832
QS_7_67_15
GCA_003022505.1ScaffoldPXTQ00000000SAMN06020833
QS_8_64_10
GCA_003023245.1ScaffoldPXTR00000000SAMN06020834
QS_8_68_15
GCA_003022485.1ScaffoldPXTS00000000SAMN06020835
QS_8_68_28
GCA_003022535.1ScaffoldPXTT00000000SAMN06020836
QS_9_68_14
GCA_003022515.1ScaffoldPXTU00000000SAMN06020837
SW_10_40_5
GCA_003022985.1ScaffoldPXTV00000000SAMN06020838
SW_11_45_7
GCA_003023295.1ScaffoldPXTW00000000SAMN06020839
SW_11_64_17
GCA_003023275.1ScaffoldPXTX00000000SAMN06020840
SW_4_67_19
GCA_003022965.1ScaffoldPXTY00000000SAMN06020841
SW_7_64_58
GCA_003022465.1ScaffoldPXTZ00000000SAMN06020842
SW_8_64_56
GCA_003022435.1ScaffoldPXUA00000000SAMN06020843
SW_9_63_38
GCA_003022365.1ScaffoldPXOU00000000SAMN06020707
QS_5_54_17
GCA_003021965.1ScaffoldPXOV00000000SAMN06020708
QS_8_54_8
GCA_003022325.1ScaffoldPXOW00000000SAMN06020709
SW_7_54_9
GCA_003021585.1ScaffoldPXPK00000000SAMN06020723
QH_10_48_56
GCA_003021605.1ScaffoldPXPJ00000000SAMN06020722
QH_1_48_107
GCA_003021545.1ScaffoldPXPL00000000SAMN06020724
QH_2_48_84
GCA_003021535.1ScaffoldPXPM00000000SAMN06020725
QH_3_48_40
GCA_003022265.1ScaffoldPXPN00000000SAMN06020726
QH_6_48_35
GCA_003022245.1ScaffoldPXPO00000000SAMN06020727
QH_7_48_89
GCA_003021525.1ScaffoldPXPP00000000SAMN06020728
QH_8_48_120
GCA_003021925.1ScaffoldPXPQ00000000SAMN06020729
QH_9_48_43
GCA_003022225.1ScaffoldPXPR00000000SAMN06020730
QS_1_48_34
GCA_003021885.1ScaffoldPXPS00000000SAMN06020731
QS_3_48_167
GCA_003021505.1ScaffoldPXPT00000000SAMN06020732
QS_4_48_99
GCA_003022205.1ScaffoldPXPU00000000SAMN06020733
QS_5_48_63
GCA_003021485.1ScaffoldPXPV00000000SAMN06020734
QS_6_48_18
GCA_003021855.1ScaffoldPXPW00000000SAMN06020735
QS_7_48_42
GCA_003022145.1ScaffoldPXQG00000000SAMN06020745
QS_8_48_54
GCA_003022125.1ScaffoldPXQH00000000SAMN06020746
QS_8_64_29
GCA_003021465.1ScaffoldPXPX00000000SAMN06020736
QS_9_48_30
GCA_003022175.1ScaffoldPXPY00000000SAMN06020737
SW_10_48_33
GCA_003021435.1ScaffoldPXPZ00000000SAMN06020738
SW_11_48_12
GCA_003021425.1ScaffoldPXQA00000000SAMN06020739
SW_12_48_29
GCA_003022095.1ScaffoldPXQI00000000SAMN06020747
SW_4_48_29
GCA_003021405.1ScaffoldPXQB00000000SAMN06020740
SW_5_48_44
GCA_003021845.1ScaffoldPXQC00000000SAMN06020741
SW_6_48_11
GCA_003022165.1ScaffoldPXQD00000000SAMN06020742
SW_7_48_12
GCA_003021825.1ScaffoldPXQE00000000SAMN06020743
SW_8_48_13
GCA_003021905.1ScaffoldPXPI00000000SAMN06020721
SW_9_44_58
GCA_003021375.1ScaffoldPXQF00000000SAMN06020744
SW_9_47_5
GCA_003022085.1ScaffoldPXQK00000000SAMN06020749
QH_10_65_19
GCA_003021335.1ScaffoldPXQL00000000SAMN06020750
QH_10_67_13
GCA_003021305.1ScaffoldPXQN00000000SAMN06020752
QH_10_67_22
GCA_003021325.1ScaffoldPXQM00000000SAMN06020751
QH_10_70_21
GCA_003021365.1ScaffoldPXQJ00000000SAMN06020748
QH_1_68_42
GCA_003021285.1ScaffoldPXQO00000000SAMN06020753
QH_2_65_14
GCA_003021245.1ScaffoldPXQP00000000SAMN06020754
QH_2_66_30
GCA_003021225.1ScaffoldPXQQ00000000SAMN06020755
QH_3_68_24
GCA_003021235.1ScaffoldPXQR00000000SAMN06020756
QH_6_64_20
GCA_003021205.1ScaffoldPXQS00000000SAMN06020757
QH_6_66_25
GCA_003021795.1ScaffoldPXQT00000000SAMN06020758
QH_6_68_27
GCA_003021785.1ScaffoldPXQU00000000SAMN06020759
QH_7_65_31
GCA_003021175.1ScaffoldPXQV00000000SAMN06020760
QH_7_66_36
GCA_003021165.1ScaffoldPXQW00000000SAMN06020761
QH_7_66_37
GCA_003021115.1ScaffoldPXQX00000000SAMN06020762
QH_7_68_42
GCA_003021745.1ScaffoldPXQY00000000SAMN06020763
QH_7_69_31
GCA_003021725.1ScaffoldPXRA00000000SAMN06020765
QH_8_64_26
GCA_003022045.1ScaffoldPXRC00000000SAMN06020767
QH_8_67_27
GCA_003021755.1ScaffoldPXQZ00000000SAMN06020764
QH_8_67_36
GCA_003022055.1ScaffoldPXRB00000000SAMN06020766
QH_8_68_33
GCA_003021145.1ScaffoldPXRD00000000SAMN06020768
QH_9_66_26
GCA_003022025.1ScaffoldPXRF00000000SAMN06020770
QS_1_67_19
GCA_003021105.1ScaffoldPXRG00000000SAMN06020771
QS_1_68_17
GCA_003021085.1ScaffoldPXRE00000000SAMN06020769
QS_1_68_20
GCA_003021055.1ScaffoldPXRH00000000SAMN06020772
QS_1_68_44
GCA_003021005.1ScaffoldPXRI00000000SAMN06020773
QS_1_69_70
GCA_003021705.1ScaffoldPXRJ00000000SAMN06020774
QS_3_64_16
GCA_003021685.1ScaffoldPXRO00000000SAMN06020779
QS_4_62_28
GCA_003021015.1ScaffoldPXRK00000000SAMN06020775
QS_4_66_20
GCA_003020965.1ScaffoldPXRL00000000SAMN06020776
QS_4_69_225
GCA_003021655.1ScaffoldPXRP00000000SAMN06020780
QS_4_69_31
GCA_003021045.1ScaffoldPXRN00000000SAMN06020778
QS_4_69_34
GCA_003020985.1ScaffoldPXRM00000000SAMN06020777
QS_4_70_19
GCA_003023785.1ScaffoldPXRS00000000SAMN06020783
QS_5_68_33
GCA_003022005.1ScaffoldPXRQ00000000SAMN06020781
QS_5_70_15
GCA_003021975.1ScaffoldPXRR00000000SAMN06020782
QS_5_70_17
GCA_003020925.1ScaffoldPXRT00000000SAMN06020784
QS_6_64_34
GCA_003020945.1ScaffoldPXRU00000000SAMN06020785
QS_6_71_20
GCA_003023525.1ScaffoldPXRV00000000SAMN06020786
QS_7_68_65
GCA_003023575.1ScaffoldPXRW00000000SAMN06020787
QS_7_69_60
GCA_003022925.1ScaffoldPXRY00000000SAMN06020789
QS_8_65_32
GCA_003023195.1ScaffoldPXRX00000000SAMN06020788
QS_8_69_26
GCA_003022945.1ScaffoldPXRZ00000000SAMN06020790
QS_8_69_73
GCA_003023165.1ScaffoldPXSD00000000SAMN06020794
QS_9_67_15
GCA_003023185.1ScaffoldPXSB00000000SAMN06020792
QS_9_67_17
GCA_003023565.1ScaffoldPXSA00000000SAMN06020791
QS_9_68_17
GCA_003022905.1ScaffoldPXSE00000000SAMN06020795
QS_9_68_42
GCA_003023535.1ScaffoldPXSC00000000SAMN06020793
QS_9_70_65
GCA_003022845.1ScaffoldPXSF00000000SAMN06020796
SW_10_66_29
GCA_003023485.1ScaffoldPXSG00000000SAMN06020797
SW_10_68_16
GCA_003023445.1ScaffoldPXSJ00000000SAMN06020800
SW_12_67_38
GCA_003023455.1ScaffoldPXSI00000000SAMN06020799
SW_12_69_24
GCA_003022885.1ScaffoldPXSH00000000SAMN06020798
SW_12_71_31
GCA_003022815.1ScaffoldPXSL00000000SAMN06020802
SW_5_68_122
GCA_003022865.1ScaffoldPXSK00000000SAMN06020801
SW_5_70_135
GCA_003023465.1ScaffoldPXSM00000000SAMN06020803
SW_6_65_15
GCA_003023215.1ScaffoldPXSN00000000SAMN06020804
SW_6_65_46
GCA_003022725.1ScaffoldPXSQ00000000SAMN06020807
SW_7_65_23
GCA_003022785.1ScaffoldPXSO00000000SAMN06020805
SW_7_68_16
GCA_003022805.1ScaffoldPXSP00000000SAMN06020806
SW_7_71_33
GCA_003022765.1ScaffoldPXSR00000000SAMN06020808
SW_8_65_20
GCA_003023415.1ScaffoldPXSS00000000SAMN06020809
SW_8_66_22
GCA_003023405.1ScaffoldPXST00000000SAMN06020810
SW_8_68_21
GCA_003022685.1ScaffoldPXSV00000000SAMN06020812
SW_9_67_24
GCA_003022745.1ScaffoldPXSU00000000SAMN06020811
SW_9_67_25
GCA_003009845.1ScaffoldPXPB00000000SAMN06020714
QH_8_44_6
GCA_003009825.1ScaffoldPXPC00000000SAMN06020715
SW_10_44_10
GCA_003009815.1ScaffoldPXPD00000000SAMN06020716
SW_4_43_9
GCA_003009795.1ContigPXPE00000000SAMN06020717
SW_7_43_1
GCA_003009775.1ScaffoldPXPF00000000SAMN06020718
SW_7_46_7
GCA_003022345.1ScaffoldPXOX00000000SAMN06020710
QH_9_35_7
GCA_003022305.1ScaffoldPXOZ00000000SAMN06020712
SW_4_46_8
GCA_003021915.1ScaffoldPXOY00000000SAMN06020711
SW_4_49_11
GCA_003022255.1ScaffoldPXPA00000000SAMN06020713
SW_6_46_9
GCA_003022425.1ScaffoldPXUC00000000SAMN06020845
SW_6_67_9
GCA_003009755.1ScaffoldPXUB00000000SAMN06020844
SW_10_69_26
SRA Data Details
ParameterValue
Data volume, Gbases86
Data volume, Mbytes68962

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