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Accession: PRJNA612640 ID: 612640

Bacteria

Mammary pathogenic bacteria

Whole genome sequencing for E. coli isolates from clinical mastitis cases in Canada
AccessionPRJNA612640
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 18-Dec-2020
McGill University
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)130
SRA Experiments130
Other datasets
BioSample130
Assembly130
Assembly details:
Assembly levelNumber of Assemblies
130
130
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_016114665.1ContigJAASMA000000000SAMN14379554
20112523
GCA_016112735.1ContigJAASPV000000000SAMN14379653
20207786
GCA_016113305.1ContigJAASOU000000000SAMN14379626
22709479
GCA_016112625.1ContigJAASPZ000000000SAMN14379657
32109092
GCA_016114975.1ContigJAASLM000000000SAMN14379540
10702727
GCA_016114965.1ContigJAASLO000000000SAMN14379542
21002809
GCA_016114925.1ContigJAASLQ000000000SAMN14379544
21003035
GCA_016114915.1ContigJAASLN000000000SAMN14379541
11902638
GCA_016114905.1ContigJAASLP000000000SAMN14379543
10703014
GCA_016114845.1ContigJAASLU000000000SAMN14379548
41613979
GCA_016114865.1ContigJAASLR000000000SAMN14379545
30415454
GCA_016114825.1ContigJAASLT000000000SAMN14379547
41300398
GCA_016114815.1ContigJAASLS000000000SAMN14379546
20202040
GCA_016114805.1ContigJAASLW000000000SAMN14379550
21210525
GCA_016114775.1ContigJAASLV000000000SAMN14379549
41514177
GCA_016114755.1ContigJAASLX000000000SAMN14379551
32708899
GCA_016114745.1ContigJAASLY000000000SAMN14379552
21012914
GCA_016114725.1ContigJAASLZ000000000SAMN14379553
10415566
GCA_016114675.1ContigJAASMC000000000SAMN14379556
10715833
GCA_016114685.1ContigJAASMB000000000SAMN14379555
40714004
GCA_016115085.1ContigJAASLI000000000SAMN14379536
30800472
GCA_016115045.1ContigJAASLJ000000000SAMN14379537
32608571
GCA_016115025.1ContigJAASLL000000000SAMN14379539
41100011
GCA_016114995.1ContigJAASLK000000000SAMN14379538
40202761
GCA_016112595.1ContigJAASQD000000000SAMN14379661
10407462
GCA_016112575.1ContigJAASQB000000000SAMN14379659
10209356
GCA_016112565.1ContigJAASQC000000000SAMN14379660
40611716
GCA_016112535.1ContigJAASQF000000000SAMN14379663
31501194
GCA_016112525.1ContigJAASQE000000000SAMN14379662
31801812
GCA_016112485.1ContigJAASQG000000000SAMN14379664
21501982
GCA_016112475.1ContigJAASQH000000000SAMN14379665
40603896
GCA_016113525.1ContigJAASOH000000000SAMN14379613
40816739
GCA_016113505.1ContigJAASOI000000000SAMN14379614
10216675
GCA_016113455.1ContigJAASOK000000000SAMN14379616
21914232
GCA_016113435.1ContigJAASOL000000000SAMN14379617
31716895
GCA_016113445.1ContigJAASOM000000000SAMN14379618
10816417
GCA_016113425.1ContigJAASON000000000SAMN14379619
21017438
GCA_016113405.1ContigJAASOJ000000000SAMN14379615
21914256
GCA_016113375.1ContigJAASOO000000000SAMN14379620
40317434
GCA_016113365.1ContigJAASOP000000000SAMN14379621
21215100
GCA_016113335.1ContigJAASOQ000000000SAMN14379622
21416415
GCA_016113275.1ContigJAASOR000000000SAMN14379623
20508456
GCA_016113265.1ContigJAASOS000000000SAMN14379624
22710987
GCA_016113225.1ContigJAASOV000000000SAMN14379627
22510686
GCA_016113195.1ContigJAASOW000000000SAMN14379628
40614038
GCA_016113185.1ContigJAASOX000000000SAMN14379629
30812765
GCA_016113175.1ContigJAASOY000000000SAMN14379630
31412124
GCA_016113165.1ContigJAASOZ000000000SAMN14379631
30810358
GCA_016113125.1ContigJAASPA000000000SAMN14379632
41810132
GCA_016113135.1ContigJAASPB000000000SAMN14379633
22114969
GCA_016113085.1ContigJAASPC000000000SAMN14379634
21415616
GCA_016113075.1ContigJAASPD000000000SAMN14379635
21013690
GCA_016113065.1ContigJAASPE000000000SAMN14379636
21317521
GCA_016113045.1ContigJAASPH000000000SAMN14379639
22115768
GCA_016113015.1ContigJAASPI000000000SAMN14379640
21014604
GCA_016112995.1ContigJAASPF000000000SAMN14379637
21314933
GCA_016112975.1ContigJAASPJ000000000SAMN14379641
20316198
GCA_016112965.1ContigJAASPG000000000SAMN14379638
21314773
GCA_016112915.1ContigJAASPN000000000SAMN14379645
40709628
GCA_016112905.1ContigJAASPK000000000SAMN14379642
20214326
GCA_016112895.1ContigJAASPL000000000SAMN14379643
20216764
GCA_016112885.1ContigJAASPM000000000SAMN14379644
40910260
GCA_016112865.1ContigJAASPQ000000000SAMN14379648
20309619
GCA_016112835.1ContigJAASPO000000000SAMN14379646
21310034
GCA_016112825.1ContigJAASPP000000000SAMN14379647
21207914
GCA_016112785.1ContigJAASPT000000000SAMN14379651
31909860
GCA_016112795.1ContigJAASPS000000000SAMN14379650
20309640
GCA_016112755.1ContigJAASPR000000000SAMN14379649
30810211
GCA_016114645.1ContigJAASMD000000000SAMN14379557
40611044
GCA_016114605.1ContigJAASME000000000SAMN14379558
41701140
GCA_016114615.1ContigJAASMG000000000SAMN14379560
21413445
GCA_016114575.1ContigJAASMF000000000SAMN14379559
20510930
GCA_016114565.1ContigJAASMI000000000SAMN14379562
10213407
GCA_016114535.1ContigJAASMH000000000SAMN14379561
31313964
GCA_016114525.1ContigJAASML000000000SAMN14379565
32016505
GCA_016114505.1ContigJAASMJ000000000SAMN14379563
21012853
GCA_016114485.1ContigJAASMK000000000SAMN14379564
31716253
GCA_016114445.1ContigJAASMM000000000SAMN14379566
41602577
GCA_016114435.1ContigJAASMN000000000SAMN14379567
10117996
GCA_016114425.1ContigJAASMO000000000SAMN14379568
32400021
GCA_016114395.1ContigJAASMQ000000000SAMN14379570
22113962
GCA_016114385.1ContigJAASMP000000000SAMN14379569
30215009
GCA_016114345.1ContigJAASMR000000000SAMN14379571
20314330
GCA_016114335.1ContigJAASMS000000000SAMN14379572
11211990
GCA_016114325.1ContigJAASMT000000000SAMN14379573
21317859
GCA_016114305.1ContigJAASMU000000000SAMN14379574
20108939
GCA_016114275.1ContigJAASMW000000000SAMN14379576
31209373
GCA_016114265.1ContigJAASMV000000000SAMN14379575
21309335
GCA_016114225.1ContigJAASMX000000000SAMN14379577
40611099
GCA_016114235.1ContigJAASMY000000000SAMN14379578
21202100
GCA_016114185.1ContigJAASNB000000000SAMN14379581
11909132
GCA_016114175.1ContigJAASMZ000000000SAMN14379579
21202124
GCA_016114165.1ContigJAASNA000000000SAMN14379580
22406217
GCA_016114125.1ContigJAASNC000000000SAMN14379582
31709637
GCA_016114115.1ContigJAASND000000000SAMN14379583
10109199
GCA_016114105.1ContigJAASNE000000000SAMN14379584
10709818
GCA_016114065.1ContigJAASNF000000000SAMN14379585
20206833
GCA_016114075.1ContigJAASNG000000000SAMN14379586
10208472
GCA_016114035.1ContigJAASNH000000000SAMN14379587
32107654
GCA_016114025.1ContigJAASNI000000000SAMN14379588
22406187
GCA_016114005.1ContigJAASNJ000000000SAMN14379589
40706726
GCA_016113965.1ContigJAASNL000000000SAMN14379591
32009354
GCA_016113955.1ContigJAASNK000000000SAMN14379590
41207659
GCA_016113945.1ContigJAASNN000000000SAMN14379593
20703448
GCA_016113925.1ContigJAASNO000000000SAMN14379594
21105562
GCA_016113905.1ContigJAASNM000000000SAMN14379592
41606261
GCA_016113875.1ContigJAASNQ000000000SAMN14379596
30300071
GCA_016113865.1ContigJAASNP000000000SAMN14379595
22306838
GCA_016113845.1ContigJAASNR000000000SAMN14379597
11800057
GCA_016113815.1ContigJAASNS000000000SAMN14379598
41505922
GCA_016113805.1ContigJAASNU000000000SAMN14379600
10700396
GCA_016113775.1ContigJAASNT000000000SAMN14379599
11603481
GCA_016113765.1ContigJAASNW000000000SAMN14379602
32608632
GCA_016113745.1ContigJAASNV000000000SAMN14379601
10800294
GCA_016113715.1ContigJAASNY000000000SAMN14379604
22713162
GCA_016113705.1ContigJAASNZ000000000SAMN14379605
20814168
GCA_016113655.1ContigJAASOB000000000SAMN14379607
21212574
GCA_016113665.1ContigJAASOA000000000SAMN14379606
21211973
GCA_016113645.1ContigJAASNX000000000SAMN14379603
41505908
GCA_016113615.1ContigJAASOD000000000SAMN14379609
40717203
GCA_016113565.1ContigJAASOE000000000SAMN14379610
40115481
GCA_016113585.1ContigJAASOC000000000SAMN14379608
41809617
GCA_016113555.1ContigJAASOG000000000SAMN14379612
10417409
GCA_016112725.1ContigJAASPU000000000SAMN14379652
40810751
GCA_016112685.1ContigJAASPW000000000SAMN14379654
21407796
GCA_016112675.1ContigJAASPX000000000SAMN14379655
21007859
GCA_016112665.1ContigJAASPY000000000SAMN14379656
32309478
GCA_016112645.1ContigJAASQA000000000SAMN14379658
10109458
GCA_016113325.1ContigJAASOT000000000SAMN14379625
10112441
GCA_016113545.1ContigJAASOF000000000SAMN14379611
40717883
SRA Data Details
ParameterValue
Data volume, Gbases61
Data volume, Mbytes36508

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