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Accession: PRJNA702526 ID: 702526

Pimephales promelas strain:EPAAWBERC (fathead minnow)

Pimephales promelas strain:EPAAWBERC RefSeq Genome sequencing and assembly

See Genome Information for Pimephales promelas
The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA565199). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.
AccessionPRJNA702526
Data TypeRefSeq Genome sequencing and assembly, RefSeq Transcriptome or Gene expression
ScopeMonoisolate
OrganismPimephales promelas[Taxonomy ID: 90988]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales; Pimephales promelas
Publications
  • Martinson JW et al., "De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome.", Environ Toxicol Chem, 2022 Feb;41(2):448-461
  • Liu S et al., "The complete mitochondrial genome of Pimephales promelas (Cypriniformes: Cyprinidae).", Mitochondrial DNA A DNA Mapp Seq Anal, 2016 Sep;27(5):3711-2
SubmissionRegistration date: 24-Jan-2021
US EPA
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)58209
Transcript57299
Protein Sequences48442
Publications
PubMed2
PMC1
Other datasets
BioSample1
Assembly1
Related GenBank Project
PRJNA565199 : Pimephales promelas strain:EPAAWBERC Genome sequencing and assembly

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