ID 559813 - BioProject

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Accession: PRJNA559813 ID: 559813

Long and short read sequencing and assembly of Natural Drosophila melanogaster genomes

We used long read sequencing (Nanopore and PacBio) for de novo assemble Drosophila melanogaster genomes form natural populations in order to identity transposable elements involved in adaptation.

Accession	PRJNA559813
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"New approaches to long-standing questions: adaptation in Drosophila" (Grant ID H2020-ERC-2014-CoG-647900, European Research Council)
Submission	Registration date: 12-Aug-2019 Institut de Biologia Evolutiva (CSIC-UPF)
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	255
WGS master	32
SRA Experiments	233
Other datasets
BioSample	32
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Total

32
32

Assembly	WGS	Chrs	BioSample	Taxonomy
GCA_020142105.1	JAEMNT000000000	7	SAMN12560254	Drosophila melanogaster
GCA_020142085.1	JAEMNR000000000	7	SAMN12560253	Drosophila melanogaster
GCA_020142025.1	JAEMNO000000000	7	SAMN15423291	Drosophila melanogaster
GCA_020141985.1	JAEMNN000000000	7	SAMN15423292	Drosophila melanogaster
GCA_020142045.1	JAEMNQ000000000	7	SAMN15423289	Drosophila melanogaster
GCA_020141595.1	JAEMMS000000000	7	SAMN12560262	Drosophila melanogaster
GCA_020141515.1	JAEMMO000000000	7	SAMN15423306	Drosophila melanogaster
GCA_020141495.1	JAEMMR000000000	7	SAMN12560252	Drosophila melanogaster
GCA_020141505.1	JAEMMQ000000000	7	SAMN12560263	Drosophila melanogaster
GCA_020142055.1	JAEMNP000000000	7	SAMN15423290	Drosophila melanogaster
GCA_020142005.1	JAEMNM000000000	7	SAMN12560255	Drosophila melanogaster
GCA_020141955.1	JAEMNL000000000	7	SAMN15423293	Drosophila melanogaster
GCA_020141935.1	JAEMNK000000000	7	SAMN12560256	Drosophila melanogaster
GCA_020141815.1	JAEMNE000000000	7	SAMN15423297	Drosophila melanogaster
GCA_020141835.1	JAEMNF000000000	7	SAMN15423296	Drosophila melanogaster
GCA_020141855.1	JAEMNH000000000	7	SAMN15423294	Drosophila melanogaster
GCA_020141845.1	JAEMNG000000000	7	SAMN15423295	Drosophila melanogaster
GCA_020141875.1	JAEMNI000000000	7	SAMN12560258	Drosophila melanogaster
GCA_020141925.1	JAEMNJ000000000	7	SAMN12560257	Drosophila melanogaster
GCA_020141765.1	JAEMNC000000000	7	SAMN12560259	Drosophila melanogaster
GCA_020141795.1	JAEMND000000000	7	SAMN15423298	Drosophila melanogaster
GCA_020141735.1	JAEMNB000000000	7	SAMN15423299	Drosophila melanogaster
GCA_020141745.1	JAEMNA000000000	7	SAMN15423300	Drosophila melanogaster
GCA_020141705.1	JAEMMZ000000000	7	SAMN15423301	Drosophila melanogaster
GCA_020141655.1	JAEMMX000000000	7	SAMN12560260	Drosophila melanogaster
GCA_020141665.1	JAEMMY000000000	7	SAMN15423302	Drosophila melanogaster
GCA_020141585.1	JAEMMU000000000	7	SAMN15423304	Drosophila melanogaster
GCA_020141675.1	JAEMMW000000000	7	SAMN12560261	Drosophila melanogaster
GCA_020141575.1	JAEMMT000000000	7	SAMN15423305	Drosophila melanogaster
GCA_020141625.1	JAEMMV000000000	7	SAMN15423303	Drosophila melanogaster
GCA_020141485.1	JAEMMP000000000	7	SAMN12560264	Drosophila melanogaster
GCA_020169495.1	JAEMNS000000000	6	SAMN15423288	Drosophila melanogaster

SRA Data Details

Parameter	Value
Data volume, Gbases	593
Data volume, Tbytes	0.42

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Long and short read sequencing and assembly of Natural Drosophila melanogaster genomes

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