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Accession: PRJNA43419 ID: 43419

Herpesviridae

Comparative genomics of Human and Suid herpesvirus for Princeton University

We are using Illumina deep sequencing to obtain and assemble full genome sequence for a number of human and suid alpha- herpesviruses. More...
AccessionPRJNA43419
Data TypeVariation
ScopeMultiisolate
OrganismHerpesviridae[Taxonomy ID: 10292]
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae
Publications
  • Szpara ML et al., "A wide extent of inter-strain diversity in virulent and vaccine strains of alphaherpesviruses.", PLoS Pathog, 2011 Oct;7(10):e1002282
  • Szpara ML et al., "Sequence variability in clinical and laboratory isolates of herpes simplex virus 1 reveals new mutations.", J Virol, 2010 May;84(10):5303-13
SubmissionRegistration date: 18-Jan-2010
Princeton University
Related Resources
Locus Tag PrefixPUHERP
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)5
SRA Experiments4
Protein Sequences357
Publications
PubMed2
PMC2
Other datasets
BioSample2
Assembly5
SRA Data Details
ParameterValue
Data volume, Gbases2
Data volume, Mbytes1356

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