Oryza sativa Japonica Group strain:Nipponbare (ID 245403) - BioProject

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Accession: PRJDB1747 ID: 245403

Oryza sativa Japonica Group strain:Nipponbare (Japanese rice)

Update of genome assembly of Oryza sativa L. Nipponbare (Os-Nipponbare-Reference-IRGSP-1.0)

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6388 additional projects are related by organism.

The Nipponbare genome assembly was updated by revising and validating the minimal tiling path of clones with the optical map for rice. More...

Accession	PRJDB1747
Data Type	Genome sequencing
Scope	Monoisolate
Organism	Oryza sativa Japonica Group[Taxonomy ID: 39947] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group
Publications (total 6) Less...	Kawahara Y et al., "Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.", Rice (N Y), 2013 Feb 6;6(1):4 More... Kawahara Y et al., "Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.", Rice (N Y), 2013 Feb 6;6(1):4 Sakai H et al., "Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.", Plant Cell Physiol, 2013 Feb;54(2):e6 Notsu Y et al., "The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants.", Mol Genet Genomics, 2002 Dec;268(4):434-45 Morton BR et al., "A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae).", Curr Genet, 1993 Oct;24(4):357-65 Shimada H et al., "Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes.", Nucleic Acids Res, 1991 Mar 11;19(5):983-95 Hiratsuka J et al., "The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals.", Mol Gen Genet, 1989 Jun;217(2-3):185-94 Less...
Submission	Registration date: 10-Oct-2015 National Institute of Agrobiological Sciences
Related Resources	The Rice Annotation Project Database (RAP-DB) The MSU Rice Genome Annotation Project Database
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	55
Protein Sequences	48407
Publications
PubMed	6
PMC	3
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	Chrs	BioSample	Taxonomy
GCA_001433935.1	Chromosome	12	SAMD00000397	Oryza sativa Japonica Group

Related RefSeq Project

PRJNA122 : Whole genome RefSeq project for Oryza sativa japonica group

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Oryza sativa Japonica Group strain:Nipponbare (Japanese rice)

Update of genome assembly of Oryza sativa L. Nipponbare (Os-Nipponbare-Reference-IRGSP-1.0)

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