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Accession: PRJNA533584 ID: 533584

Astyanax mexicanus isolate:Pachon cavefish (Mexican tetra)

Astyanax mexicanus isolate:Pachon cavefish Genome sequencing and assembly

See Genome Information for Astyanax mexicanus
Astyanax mexicanus provides a model for retinal degeneration diseases of old age.
AccessionPRJNA533584
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismAstyanax mexicanus[Taxonomy ID: 7994]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax; Astyanax mexicanus
PublicationsMcGaugh SE et al., "The cavefish genome reveals candidate genes for eye loss.", Nat Commun, 2014 Oct 20;5:5307
Grants
  • "Whole genome assembly resources for aquatic models of human disease" (Grant ID 8 R24 OD011198-02, National Center for Research Resources)
SubmissionRegistration date: 22-Apr-2019
Aquatic Genome Models
- Washington University School of Medicine
- Washington University School of Medince
Locus Tag PrefixFAT36
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)10736
WGS master1
SRA Experiments12
Publications
PubMed1
PMC1
Other datasets
BioSample4
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases163
Data volume, Tbytes0.11

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