Rathayibacter (ID 432233) - BioProject

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Accession: PRJNA432233 ID: 432233

Rathayibacter

Rathayibacter toxicus, Rathayibacter iranicus, Rathayibacter tritici, Rathayibacter rathayi, Clavibacter michiganensis, Pseudoclavibacter Genome sequencing and assembly

A population study of Rathayibacter toxicus from Australia, as well as a paired population of a related novel Rathayibacter species primarily found in Oregon. More...

Accession	PRJNA432233
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Molecular detection of Rathayibacter species and validation by a survey in Oregon" (Grant ID 3.0532.01, United States Dept. of Agriculture, Animal and Plant Health Inspection Service) "Molecular detection of Rathayibacter species and validation by a survey in Oregon" (Grant ID 3.0532.02, United States Dept. of Agriculture, Animal and Plant Health Inspection Service)
Submission	Registration date: 30-Jan-2018 Oregon State University
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8866
WGS master	122
SRA Experiments	122
Protein Sequences	369006
Other datasets
BioSample	123
Assembly	122

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

96
26
122

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002931035.1	PSXW00000000	SAMN08438837	AY2B8	Clavibacter michiganensis
GCA_002931335.1	PSTW00000000	SAMN08438828	Z001	Clavibacter michiganensis
GCA_002931295.1	PSTV00000000	SAMN08438829	Z002	Clavibacter michiganensis
GCA_002931175.1	PSTR00000000	SAMN08438833	AY1B2	Clavibacter michiganensis
GCA_002931155.1	PSTS00000000	SAMN08438832	AY1A6	Clavibacter michiganensis
GCA_002931135.1	PSXY00000000	SAMN08438834	AY1B3	Clavibacter michiganensis
GCA_002931075.1	PSTQ00000000	SAMN08438835	AY1F1	Pseudoclavibacter sp. AY1F1
GCA_002931055.1	PSXX00000000	SAMN08438836	AY1H1	Pseudoclavibacter sp. AY1H1
GCA_002931575.1	PSUA00000000	SAMN08438820	RFBA6	Pseudoclavibacter sp. RFBA6
GCA_002931555.1	PSTZ00000000	SAMN08438821	RFBB5	Pseudoclavibacter sp. RFBB5
GCA_002931515.1	PSYC00000000	SAMN08438822	RFBG4	Pseudoclavibacter sp. RFBG4
GCA_002931455.1	PSTY00000000	SAMN08438823	RFBH5	Pseudoclavibacter sp. RFBH5
GCA_002931435.1	PSYB00000000	SAMN08438824	RFBI4	Pseudoclavibacter sp. RFBI4
GCA_002931395.1	PSYA00000000	SAMN08438825	RFBI5	Pseudoclavibacter sp. RFBI5
GCA_002931375.1	PSXZ00000000	SAMN08438826	RFBJ3	Pseudoclavibacter sp. RFBJ3
GCA_002931355.1	PSTX00000000	SAMN08438827	RFBJ5	Pseudoclavibacter sp. RFBJ5
GCA_002931215.1	PSTU00000000	SAMN08438830	Z016	Pseudoclavibacter sp. Z016
GCA_002933115.1	PSXT00000000	SAMN08438723	TRS5	Rathayibacter iranicus
GCA_002933035.1	PSXS00000000	SAMN08438724	DSM 7484	Rathayibacter iranicus
GCA_002932965.1	PSXU00000000	SAMN08438722	FH154	Rathayibacter iranicus
GCA_002932895.1	PSWP00000000	SAMN08438753	AY1A8	Rathayibacter rathayi
GCA_002933215.1	PSXQ00000000	SAMN08438726	Z007	Rathayibacter rathayi
GCA_002933195.1	PSXP00000000	SAMN08438727	Z015	Rathayibacter rathayi
GCA_002933175.1	PSXO00000000	SAMN08438728	Z022	Rathayibacter rathayi
GCA_002933255.1	PSXR00000000	SAMN08438725	CS6	Rathayibacter rathayi
GCA_002931255.1	PSUK00000000	SAMN08438810	AY2A3	Rathayibacter rathayi
GCA_002931475.1	PSUI00000000	SAMN08438812	AY2A9	Rathayibacter rathayi
GCA_002931675.1	PSUD00000000	SAMN08438817	AY2B6	Rathayibacter rathayi
GCA_002931815.1	PSUP00000000	SAMN08438805	ICMP 2576	Rathayibacter rathayi
GCA_002931735.1	PSUF00000000	SAMN08438815	AY2B4	Rathayibacter rathayi
GCA_002932675.1	PSWI00000000	SAMN08438760	AY1B9	Rathayibacter rathayi
GCA_002932535.1	PSVT00000000	SAMN08438775	AY1D6	Rathayibacter rathayi
GCA_002932375.1	PSVR00000000	SAMN08438777	AY1D8	Rathayibacter rathayi
GCA_002932135.1	PSUY00000000	SAMN08438796	AY1G4	Rathayibacter rathayi
GCA_002932075.1	PSUX00000000	SAMN08438797	AY1G7	Rathayibacter rathayi
GCA_002931955.1	PSWA00000000	SAMN08438768	AY1C8	Rathayibacter rathayi
GCA_002931935.1	PSUT00000000	SAMN08438801	AY1H5	Rathayibacter rathayi
GCA_002931915.1	PSUS00000000	SAMN08438802	AY1H6	Rathayibacter rathayi
GCA_002931895.1	PSUR00000000	SAMN08438803	AY1H7	Rathayibacter rathayi
GCA_002931855.1	PSUQ00000000	SAMN08438804	ICMP 2572	Rathayibacter rathayi
GCA_002931095.1	PSUJ00000000	SAMN08438811	AY2A5	Rathayibacter rathayi
GCA_002930915.1	PSVJ00000000	SAMN08438785	AY1E7	Rathayibacter rathayi
GCA_002930835.1	PSUL00000000	SAMN08438809	AY1I9	Rathayibacter rathayi
GCA_002931015.1	PSXV00000000	SAMN08321535	AY1A1	Rathayibacter sp. AY1A1
GCA_002930935.1	PSTP00000000	SAMN08321536	AY1A2	Rathayibacter sp. AY1A2
GCA_002930975.1	PSTO00000000	SAMN08321537	AY1A3	Rathayibacter sp. AY1A3
GCA_002930955.1	PSTN00000000	SAMN08322058	AY1A4	Rathayibacter sp. AY1A4
GCA_002930875.1	PSTM00000000	SAMN08322059	AY1A5	Rathayibacter sp. AY1A5
GCA_002930845.1	PSTL00000000	SAMN08322068	AY1A7	Rathayibacter sp. AY1A7
GCA_002932825.1	PSWO00000000	SAMN08438754	AY1B1	Rathayibacter sp. AY1B1
GCA_002932815.1	PSWN00000000	SAMN08438755	AY1B4	Rathayibacter sp. AY1B4
GCA_002932795.1	PSWM00000000	SAMN08438756	AY1B5	Rathayibacter sp. AY1B5
GCA_002932755.1	PSWL00000000	SAMN08438757	AY1B6	Rathayibacter sp. AY1B6
GCA_002932735.1	PSWK00000000	SAMN08438758	AY1B7	Rathayibacter sp. AY1B7
GCA_002932775.1	PSWJ00000000	SAMN08438759	AY1B8	Rathayibacter sp. AY1B8
GCA_002932105.1	PSWH00000000	SAMN08438761	AY1C1	Rathayibacter sp. AY1C1
GCA_002931195.1	PSWG00000000	SAMN08438762	AY1C2	Rathayibacter sp. AY1C2
GCA_002932255.1	PSWF00000000	SAMN08438763	AY1C3	Rathayibacter sp. AY1C3
GCA_002932195.1	PSWE00000000	SAMN08438764	AY1C4	Rathayibacter sp. AY1C4
GCA_002931705.1	PSWD00000000	SAMN08438765	AY1C5	Rathayibacter sp. AY1C5
GCA_002931535.1	PSWC00000000	SAMN08438766	AY1C6	Rathayibacter sp. AY1C6
GCA_002931865.1	PSWB00000000	SAMN08438767	AY1C7	Rathayibacter sp. AY1C7
GCA_002932315.1	PSVZ00000000	SAMN08438769	AY1C9	Rathayibacter sp. AY1C9
GCA_002932635.1	PSVY00000000	SAMN08438770	AY1D1	Rathayibacter sp. AY1D1
GCA_002932695.1	PSVX00000000	SAMN08438771	AY1D2	Rathayibacter sp. AY1D2
GCA_002932595.1	PSVW00000000	SAMN08438772	AY1D3	Rathayibacter sp. AY1D3
GCA_002932555.1	PSVV00000000	SAMN08438773	AY1D4	Rathayibacter sp. AY1D4
GCA_002932515.1	PSVU00000000	SAMN08438774	AY1D5	Rathayibacter sp. AY1D5
GCA_002932425.1	PSVS00000000	SAMN08438776	AY1D7	Rathayibacter sp. AY1D7
GCA_002932395.1	PSVQ00000000	SAMN08438778	AY1D9	Rathayibacter sp. AY1D9
GCA_002932355.1	PSVP00000000	SAMN08438779	AY1E1	Rathayibacter sp. AY1E1
GCA_002932325.1	PSVO00000000	SAMN08438780	AY1E2	Rathayibacter sp. AY1E2
GCA_002932235.1	PSVN00000000	SAMN08438781	AY1E3	Rathayibacter sp. AY1E3
GCA_002932245.1	PSVM00000000	SAMN08438782	AY1E4	Rathayibacter sp. AY1E4
GCA_002931825.1	PSVL00000000	SAMN08438783	AY1E5	Rathayibacter sp. AY1E5
GCA_002931115.1	PSVK00000000	SAMN08438784	AY1E6	Rathayibacter sp. AY1E6
GCA_002931415.1	PSVI00000000	SAMN08438786	AY1E8	Rathayibacter sp. AY1E8
GCA_002931695.1	PSVH00000000	SAMN08438787	AY1E9	Rathayibacter sp. AY1E9
GCA_002930885.1	PSVG00000000	SAMN08438788	AY1F2	Rathayibacter sp. AY1F2
GCA_002931975.1	PSVF00000000	SAMN08438789	AY1F3	Rathayibacter sp. AY1F3
GCA_002931775.1	PSVE00000000	SAMN08438790	AY1F4	Rathayibacter sp. AY1F4
GCA_002932035.1	PSVD00000000	SAMN08438791	AY1F6	Rathayibacter sp. AY1F6
GCA_002932215.1	PSVC00000000	SAMN08438792	AY1F7	Rathayibacter sp. AY1F7
GCA_002932165.1	PSVB00000000	SAMN08438793	AY1F8	Rathayibacter sp. AY1F8
GCA_002932155.1	PSVA00000000	SAMN08438794	AY1F9	Rathayibacter sp. AY1F9
GCA_002932095.1	PSUZ00000000	SAMN08438795	AY1G1	Rathayibacter sp. AY1G1
GCA_002932055.1	PSUW00000000	SAMN08438798	AY1G9	Rathayibacter sp. AY1G9
GCA_002931985.1	PSUV00000000	SAMN08438799	AY1H2	Rathayibacter sp. AY1H2
GCA_002932015.1	PSUU00000000	SAMN08438800	AY1H3	Rathayibacter sp. AY1H3
GCA_002931315.1	PSUH00000000	SAMN08438813	AY2B1	Rathayibacter sp. AY2B1
GCA_002931755.1	PSUG00000000	SAMN08438814	AY2B3	Rathayibacter sp. AY2B3
GCA_002931645.1	PSUE00000000	SAMN08438816	AY2B5	Rathayibacter sp. AY2B5
GCA_002931635.1	PSUC00000000	SAMN08438818	AY2B7	Rathayibacter sp. AY2B7
GCA_002931595.1	PSUB00000000	SAMN08438819	AY2B9	Rathayibacter sp. AY2B9
GCA_002932915.1	PSWQ00000000	SAMN08438752	RFBD1	Rathayibacter sp. RFBD1
GCA_002932855.1	PSWR00000000	SAMN08438751	TRS19	Rathayibacter sp. TRS19
GCA_002932715.1	PSXD00000000	SAMN08438739	FH147	Rathayibacter toxicus
GCA_002932935.1	PSWV00000000	SAMN08438747	FH89	Rathayibacter toxicus
GCA_002932995.1	PSWU00000000	SAMN08438748	FH99	Rathayibacter toxicus
GCA_002933235.1	PSXN00000000	SAMN08438729	FH100	Rathayibacter toxicus
GCA_002933155.1	PSXL00000000	SAMN08438731	FH137	Rathayibacter toxicus
GCA_002933125.1	PSXM00000000	SAMN08438730	FH128	Rathayibacter toxicus
GCA_002933075.1	PSXI00000000	SAMN08438734	FH140	Rathayibacter toxicus
GCA_002933095.1	PSXJ00000000	SAMN08438733	FH139	Rathayibacter toxicus
GCA_002933055.1	PSXK00000000	SAMN08438732	FH138	Rathayibacter toxicus
GCA_002933015.1	PSXH00000000	SAMN08438735	FH141	Rathayibacter toxicus
GCA_002931615.1	PSXC00000000	SAMN08438740	FH149	Rathayibacter toxicus
GCA_002931795.1	PSWZ00000000	SAMN08438743	FH81	Rathayibacter toxicus
GCA_002932295.1	PSXA00000000	SAMN08438742	FH78	Rathayibacter toxicus
GCA_002932415.1	PSXB00000000	SAMN08438741	FH183	Rathayibacter toxicus
GCA_002932495.1	PSWX00000000	SAMN08438745	FH85	Rathayibacter toxicus
GCA_002932475.1	PSWW00000000	SAMN08438746	FH86	Rathayibacter toxicus
GCA_002932455.1	PSXE00000000	SAMN08438738	FH146	Rathayibacter toxicus
GCA_002932575.1	PSXF00000000	SAMN08438737	FH145	Rathayibacter toxicus
GCA_002932645.1	PSWY00000000	SAMN08438744	FH82	Rathayibacter toxicus
GCA_002932615.1	PSXG00000000	SAMN08438736	FH142	Rathayibacter toxicus
GCA_002931485.1	PSUO00000000	SAMN08438806	GSPB 2748	Rathayibacter tritici
GCA_002931275.1	PSUN00000000	SAMN08438807	GSPB 2752	Rathayibacter tritici
GCA_002932955.1	PSWT00000000	SAMN08438749	ICMP 2628	Rathayibacter tritici
GCA_002932875.1	PSWS00000000	SAMN08438750	DSM 7486	Rathayibacter tritici
GCA_002930995.1	PSUM00000000	SAMN08438808	ATCC 11402	Rathayibacter tritici
GCA_002931235.1	PSTT00000000	SAMN08438831	Z020	Subtercola sp. Z020

SRA Data Details

Parameter	Value
Data volume, Gbases	103
Data volume, Mbytes	43635

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Rathayibacter

Rathayibacter toxicus, Rathayibacter iranicus, Rathayibacter tritici, Rathayibacter rathayi, Clavibacter michiganensis, Pseudoclavibacter Genome sequencing and assembly

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