Display Settings:

Format

Send to:

Choose Destination

Links from Protein

Accession: PRJNA432233 ID: 432233

Rathayibacter

Rathayibacter toxicus, Rathayibacter iranicus, Rathayibacter tritici, Rathayibacter rathayi, Clavibacter michiganensis, Pseudoclavibacter Genome sequencing and assembly

A population study of Rathayibacter toxicus from Australia, as well as a paired population of a related novel Rathayibacter species primarily found in Oregon. More...
AccessionPRJNA432233
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "Molecular detection of Rathayibacter species and validation by a survey in Oregon" (Grant ID 3.0532.01, United States Dept. of Agriculture, Animal and Plant Health Inspection Service)
  • "Molecular detection of Rathayibacter species and validation by a survey in Oregon" (Grant ID 3.0532.02, United States Dept. of Agriculture, Animal and Plant Health Inspection Service)
SubmissionRegistration date: 30-Jan-2018
Oregon State University
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8866
WGS master122
SRA Experiments122
Protein Sequences369006
Other datasets
BioSample123
Assembly122
Assembly details:
Assembly levelNumber of Assemblies
96
26
122
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_002931335.1ScaffoldPSTW00000000SAMN08438828
Z001
GCA_002931295.1ContigPSTV00000000SAMN08438829
Z002
GCA_002931175.1ScaffoldPSTR00000000SAMN08438833
AY1B2
GCA_002931155.1ScaffoldPSTS00000000SAMN08438832
AY1A6
GCA_002931135.1ScaffoldPSXY00000000SAMN08438834
AY1B3
GCA_002931035.1ScaffoldPSXW00000000SAMN08438837
AY2B8
GCA_002931075.1ScaffoldPSTQ00000000SAMN08438835
AY1F1
GCA_002931055.1ScaffoldPSXX00000000SAMN08438836
AY1H1
GCA_002931575.1ContigPSUA00000000SAMN08438820
RFBA6
GCA_002931555.1ContigPSTZ00000000SAMN08438821
RFBB5
GCA_002931515.1ScaffoldPSYC00000000SAMN08438822
RFBG4
GCA_002931455.1ContigPSTY00000000SAMN08438823
RFBH5
GCA_002931435.1ContigPSYB00000000SAMN08438824
RFBI4
GCA_002931395.1ContigPSYA00000000SAMN08438825
RFBI5
GCA_002931375.1ScaffoldPSXZ00000000SAMN08438826
RFBJ3
GCA_002931355.1ContigPSTX00000000SAMN08438827
RFBJ5
GCA_002931215.1ContigPSTU00000000SAMN08438830
Z016
GCA_002933115.1ContigPSXT00000000SAMN08438723
TRS5
GCA_002933035.1ScaffoldPSXS00000000SAMN08438724
DSM 7484
GCA_002932965.1ScaffoldPSXU00000000SAMN08438722
FH154
GCA_002933255.1ScaffoldPSXR00000000SAMN08438725
CS6
GCA_002933215.1ScaffoldPSXQ00000000SAMN08438726
Z007
GCA_002933195.1ContigPSXP00000000SAMN08438727
Z015
GCA_002933175.1ScaffoldPSXO00000000SAMN08438728
Z022
GCA_002931475.1ScaffoldPSUI00000000SAMN08438812
AY2A9
GCA_002931095.1ScaffoldPSUJ00000000SAMN08438811
AY2A5
GCA_002931255.1ScaffoldPSUK00000000SAMN08438810
AY2A3
GCA_002930915.1ScaffoldPSVJ00000000SAMN08438785
AY1E7
GCA_002930835.1ScaffoldPSUL00000000SAMN08438809
AY1I9
GCA_002931815.1ScaffoldPSUP00000000SAMN08438805
ICMP 2576
GCA_002931735.1ScaffoldPSUF00000000SAMN08438815
AY2B4
GCA_002931675.1ScaffoldPSUD00000000SAMN08438817
AY2B6
GCA_002932135.1ScaffoldPSUY00000000SAMN08438796
AY1G4
GCA_002932075.1ScaffoldPSUX00000000SAMN08438797
AY1G7
GCA_002931955.1ContigPSWA00000000SAMN08438768
AY1C8
GCA_002931935.1ScaffoldPSUT00000000SAMN08438801
AY1H5
GCA_002931915.1ScaffoldPSUS00000000SAMN08438802
AY1H6
GCA_002931895.1ScaffoldPSUR00000000SAMN08438803
AY1H7
GCA_002931855.1ScaffoldPSUQ00000000SAMN08438804
ICMP 2572
GCA_002932895.1ScaffoldPSWP00000000SAMN08438753
AY1A8
GCA_002932675.1ScaffoldPSWI00000000SAMN08438760
AY1B9
GCA_002932535.1ScaffoldPSVT00000000SAMN08438775
AY1D6
GCA_002932375.1ScaffoldPSVR00000000SAMN08438777
AY1D8
GCA_002931015.1ScaffoldPSXV00000000SAMN08321535
AY1A1
GCA_002930935.1ScaffoldPSTP00000000SAMN08321536
AY1A2
GCA_002930975.1ScaffoldPSTO00000000SAMN08321537
AY1A3
GCA_002930955.1ScaffoldPSTN00000000SAMN08322058
AY1A4
GCA_002930875.1ContigPSTM00000000SAMN08322059
AY1A5
GCA_002930845.1ScaffoldPSTL00000000SAMN08322068
AY1A7
GCA_002932825.1ScaffoldPSWO00000000SAMN08438754
AY1B1
GCA_002932815.1ScaffoldPSWN00000000SAMN08438755
AY1B4
GCA_002932795.1ScaffoldPSWM00000000SAMN08438756
AY1B5
GCA_002932755.1ScaffoldPSWL00000000SAMN08438757
AY1B6
GCA_002932735.1ContigPSWK00000000SAMN08438758
AY1B7
GCA_002932775.1ScaffoldPSWJ00000000SAMN08438759
AY1B8
GCA_002932105.1ScaffoldPSWH00000000SAMN08438761
AY1C1
GCA_002931195.1ScaffoldPSWG00000000SAMN08438762
AY1C2
GCA_002932255.1ScaffoldPSWF00000000SAMN08438763
AY1C3
GCA_002932195.1ScaffoldPSWE00000000SAMN08438764
AY1C4
GCA_002931705.1ScaffoldPSWD00000000SAMN08438765
AY1C5
GCA_002931535.1ScaffoldPSWC00000000SAMN08438766
AY1C6
GCA_002931865.1ContigPSWB00000000SAMN08438767
AY1C7
GCA_002932315.1ScaffoldPSVZ00000000SAMN08438769
AY1C9
GCA_002932635.1ScaffoldPSVY00000000SAMN08438770
AY1D1
GCA_002932695.1ContigPSVX00000000SAMN08438771
AY1D2
GCA_002932595.1ScaffoldPSVW00000000SAMN08438772
AY1D3
GCA_002932555.1ScaffoldPSVV00000000SAMN08438773
AY1D4
GCA_002932515.1ScaffoldPSVU00000000SAMN08438774
AY1D5
GCA_002932425.1ContigPSVS00000000SAMN08438776
AY1D7
GCA_002932395.1ScaffoldPSVQ00000000SAMN08438778
AY1D9
GCA_002932355.1ContigPSVP00000000SAMN08438779
AY1E1
GCA_002932325.1ScaffoldPSVO00000000SAMN08438780
AY1E2
GCA_002932235.1ScaffoldPSVN00000000SAMN08438781
AY1E3
GCA_002932245.1ScaffoldPSVM00000000SAMN08438782
AY1E4
GCA_002931825.1ScaffoldPSVL00000000SAMN08438783
AY1E5
GCA_002931115.1ScaffoldPSVK00000000SAMN08438784
AY1E6
GCA_002931415.1ScaffoldPSVI00000000SAMN08438786
AY1E8
GCA_002931695.1ScaffoldPSVH00000000SAMN08438787
AY1E9
GCA_002930885.1ScaffoldPSVG00000000SAMN08438788
AY1F2
GCA_002931975.1ScaffoldPSVF00000000SAMN08438789
AY1F3
GCA_002931775.1ScaffoldPSVE00000000SAMN08438790
AY1F4
GCA_002932035.1ScaffoldPSVD00000000SAMN08438791
AY1F6
GCA_002932215.1ContigPSVC00000000SAMN08438792
AY1F7
GCA_002932165.1ScaffoldPSVB00000000SAMN08438793
AY1F8
GCA_002932155.1ScaffoldPSVA00000000SAMN08438794
AY1F9
GCA_002932095.1ScaffoldPSUZ00000000SAMN08438795
AY1G1
GCA_002932055.1ContigPSUW00000000SAMN08438798
AY1G9
GCA_002931985.1ScaffoldPSUV00000000SAMN08438799
AY1H2
GCA_002932015.1ScaffoldPSUU00000000SAMN08438800
AY1H3
GCA_002931315.1ScaffoldPSUH00000000SAMN08438813
AY2B1
GCA_002931755.1ScaffoldPSUG00000000SAMN08438814
AY2B3
GCA_002931645.1ContigPSUE00000000SAMN08438816
AY2B5
GCA_002931635.1ContigPSUC00000000SAMN08438818
AY2B7
GCA_002931595.1ScaffoldPSUB00000000SAMN08438819
AY2B9
GCA_002932915.1ContigPSWQ00000000SAMN08438752
RFBD1
GCA_002932855.1ContigPSWR00000000SAMN08438751
TRS19
GCA_002932645.1ScaffoldPSWY00000000SAMN08438744
FH82
GCA_002932615.1ContigPSXG00000000SAMN08438736
FH142
GCA_002932935.1ScaffoldPSWV00000000SAMN08438747
FH89
GCA_002932295.1ContigPSXA00000000SAMN08438742
FH78
GCA_002932415.1ScaffoldPSXB00000000SAMN08438741
FH183
GCA_002932495.1ContigPSWX00000000SAMN08438745
FH85
GCA_002932475.1ScaffoldPSWW00000000SAMN08438746
FH86
GCA_002932455.1ScaffoldPSXE00000000SAMN08438738
FH146
GCA_002932575.1ScaffoldPSXF00000000SAMN08438737
FH145
GCA_002932715.1ScaffoldPSXD00000000SAMN08438739
FH147
GCA_002931615.1ScaffoldPSXC00000000SAMN08438740
FH149
GCA_002931795.1ScaffoldPSWZ00000000SAMN08438743
FH81
GCA_002933155.1ScaffoldPSXL00000000SAMN08438731
FH137
GCA_002933235.1ScaffoldPSXN00000000SAMN08438729
FH100
GCA_002932995.1ScaffoldPSWU00000000SAMN08438748
FH99
GCA_002933125.1ScaffoldPSXM00000000SAMN08438730
FH128
GCA_002933075.1ScaffoldPSXI00000000SAMN08438734
FH140
GCA_002933095.1ScaffoldPSXJ00000000SAMN08438733
FH139
GCA_002933055.1ScaffoldPSXK00000000SAMN08438732
FH138
GCA_002933015.1ScaffoldPSXH00000000SAMN08438735
FH141
GCA_002932955.1ScaffoldPSWT00000000SAMN08438749
ICMP 2628
GCA_002931485.1ScaffoldPSUO00000000SAMN08438806
GSPB 2748
GCA_002932875.1ScaffoldPSWS00000000SAMN08438750
DSM 7486
GCA_002931275.1ScaffoldPSUN00000000SAMN08438807
GSPB 2752
GCA_002930995.1ScaffoldPSUM00000000SAMN08438808
ATCC 11402
GCA_002931235.1ScaffoldPSTT00000000SAMN08438831
Z020
SRA Data Details
ParameterValue
Data volume, Gbases103
Data volume, Mbytes43635

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center