soil metagenome (ID 432584) - BioProject

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Accession: PRJNA432584 ID: 432584

soil metagenome

Impact of Amazon land-use change on genomic diversity

We investigated the impact of deforestation on Amazon soil microorganisms.

Accession	PRJNA432584
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	soil metagenome[Taxonomy ID: 410658] unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
Grants	"Dimersions US-BIOTA-Sao Paulo: Collaborative Research: Integrating Dimesions of Microbial Biodiversity across Land Use Change in Tropical Forests" (Grant ID 1442183, National Science Foundation)
Submission	Registration date: 29-May-2018 University of Massachusetts Amherst
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6479
WGS master	28
Protein Sequences	55562
Other datasets
BioSample	30
Assembly	28

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

28
28

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_003175925.1	PSRG00000000	SAMN08455050	Amazon FNV 2010 25 4	Acidobacteriota bacterium
GCA_003175815.1	PSRC00000000	SAMN08455054	Amazon FNV 2010 23 8	Acidobacteriota bacterium
GCA_003175705.1	PSRB00000000	SAMN08455055	Amazon FNV 2010 17 8	Acidobacteriota bacterium
GCA_003175695.1	PSRA00000000	SAMN08455056	Amazon FNV 2010 13 3	Bacteroidota bacterium
GCA_003175935.1	PSRI00000000	SAMN08455048	Amazon FNV 2010 21 8	Bacteroidota bacterium
GCA_003176075.1	PSRN00000000	SAMN08455043	Amazon FNV 2010 18 1	Bdellovibrio sp.
GCA_003175865.1	PSRF00000000	SAMN08455051	subdivision4 Amazon FNV 2010 3 1	Blastocatellia bacterium
GCA_003175835.1	PSRD00000000	SAMN08455053	subdivision4 Amazon FNV 2010 39 1 1	Blastocatellia bacterium
GCA_003176165.1	PSRQ00000000	SAMN08455040	Amazon FNV 2010 28 9	Candidatus Cerribacteria bacterium 'Amazon FNV 2010 28 9'
GCA_003174035.1	PRDV00000000	SAMN08452421	Amazon FNV 2010 13 12	Candidatus Dependentiae bacterium
GCA_003173975.1	PRDU00000000	SAMN08470993	Amazon FNV 2010n 38 1 1	Candidatus Dependentiae bacterium
GCA_003173915.1	PPGL00000000	SAMN08372854	Amazon_FNV_2010_10_5_1	Candidatus Levyibacteriota bacterium
GCA_003173895.1	PJMG00000000	SAMN08165384	Amazon_FNV_2010_10_8_1	Candidatus Levyibacteriota bacterium
GCA_003173995.1	PRDT00000000	SAMN08470986	Amazon FNV 2010 10 14	Candidatus Levyibacteriota bacterium
GCA_003175915.1	PSRH00000000	SAMN08455049	Amazon FNV 2010 23 1 1	Candidatus Melainabacteria bacterium
GCA_003173865.1	PJMF00000000	SAMN08165144	Amazon_FNV_2010_13_2_2	Candidatus Paceibacterota bacterium
GCA_003173955.1	PPGK00000000	SAMN08372831	Amazon_FNV_2010_13_13	Candidatus Paceibacterota bacterium
GCA_003176155.1	PSRP00000000	SAMN08455041	Amazon FNV 2010 15 13	Candidatus Rokuibacteriota bacterium
GCA_003173905.1	PPGJ00000000	SAMN08372762	Amazon_FNV_2010_13_6_1	Candidatus Staskawiczbacteria bacterium
GCA_003173855.1	PPGI00000000	SAMN08372546	Amazon_FNV_2010_10_3_1	Candidatus Zambryskibacteria bacterium
GCA_003176115.1	PSRO00000000	SAMN08455042	Amazon FNV 2010 10 1 1 2	Chlamydiota bacterium
GCA_003175725.1	PSQZ00000000	SAMN08455057	Amazon FNV 2010 25 1	Chloroflexota bacterium
GCA_003175735.1	PSQY00000000	SAMN08455058	Amazon FNV 2010 31 3	Pseudomonadota bacterium
GCA_003175845.1	PSRE00000000	SAMN08455052	Amazon FNV 2010 19 4	Pseudomonadota bacterium
GCA_003175985.1	PSRJ00000000	SAMN08455047	subdivision3 Amazon FNV 2010 0 2 1	Terriglobia bacterium
GCA_003176015.1	PSRK00000000	SAMN08455046	Amazon FNV 2010 10 6 1	Verrucomicrobiota bacterium
GCA_003176045.1	PSRM00000000	SAMN08455044	Amazon FNV 2010 0 4	Verrucomicrobiota bacterium
GCA_003176035.1	PSRL00000000	SAMN08455045	Amazon FNV 2010 18 3 2	Verrucomicrobiota bacterium

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soil metagenome

Impact of Amazon land-use change on genomic diversity

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