Fusarium (ID 338256) - BioProject

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Accession: PRJNA338256 ID: 338256

Fusarium

Fusarium spp. isolated from onion bulbs - F. oxysporum, F. oxysporum f. sp. cepae and F. profileratum.

Development of onion lines with robust resistance to Fusarium basal rot requires understanding of the interaction between the pathogens and their hosts. More...

Accession	PRJNA338256
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Armitage AD et al., "Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae.", Sci Rep, 2018 Sep 10;8(1):13530
Grants	"Exploiting next generation sequencing technologies to understand pathogenicity and resistance in Fusarium oxysporum" (Grant ID BB/K020870/1, Biotechnology and Biological Sciences Research Council)
Submission	Registration date: 9-Aug-2016 NIAB-EMR
Related Resources	Onion disease research - Warwick Crop Centre John Clarkson - Warwick Crop Centre Harrison Lab - NIAB-EMR
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8619
WGS master	8
SRA Experiments	34
Protein Sequences	145984
Publications
PubMed	1
PMC	1
Other datasets
BioSample	33
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Scaffold

Total

1
7
8

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003615085.1	MRCU00000000	8	SAMN05529097	FoC_Fus2	Fusarium oxysporum f. sp. cepae
GCA_003615165.1	MRCZ00000000		SAMN05529103	Fo_CB3	Fusarium oxysporum
GCA_003615155.1	MRCY00000000		SAMN05529100	Fo_A28	Fusarium oxysporum
GCA_003615115.1	MRCX00000000		SAMN05529101	Fo_A13	Fusarium oxysporum
GCA_003615185.1	MRDA00000000		SAMN05529102	Fo_PG	Fusarium oxysporum
GCA_003615095.1	MRCV00000000		SAMN05529098	FoC_125	Fusarium oxysporum f. sp. cepae
GCA_003615075.1	MRCW00000000		SAMN05529099	FoC_A23	Fusarium oxysporum f. sp. cepae
GCA_003615215.1	MRDB00000000		SAMN05529104	Fp_A8	Fusarium proliferatum

SRA Data Details

Parameter	Value
Data volume, Gbases	161
Data volume, Mbytes	78806

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Fusarium

Fusarium spp. isolated from onion bulbs - F. oxysporum, F. oxysporum f. sp. cepae and F. profileratum.

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