ID 329489 - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Protein

Accession: PRJNA329489 ID: 329489

Genome sequencing and assembly of relic peas symbionts

Vicia alpestris is endemic plant, which grows in Caucasus Mountains region: Armenia, Azerbaijan, Turkey, Georgia and Russian Federation. More...

Accession	PRJNA329489
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Safronova VI et al., "Rhizobial Microsymbionts of Kamchatka Oxytropis Species Possess Genes of the Type III and VI Secretion Systems, Which Can Affect the Development of Symbiosis.", Mol Plant Microbe Interact, 2020 Oct;33(10):1232-1241 Safronova VI et al., "Taxonomically Different Co-Microsymbionts of a Relict Legume, Oxytropis popoviana, Have Complementary Sets of Symbiotic Genes and Together Increase the Efficiency of Plant Nodulation.", Mol Plant Microbe Interact, 2018 Aug;31(8):833-841
Grants	"The study of the formation of the specificity of plant-microbe interactions with relict of leguminous plants and its relation to productivity symbiosis" (Grant ID 16-16-00080, Russian Science Foundation)
Submission	Registration date: 18-Jul-2016 ARRIAM
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	760
WGS master	15
Genomic DNA	72
SRA Experiments	32
Protein Sequences	195739
Publications
PubMed	2
Other datasets
BioSample	43
Assembly	42

Assembly details:

Download

Assembly level

Number of Assemblies

Complete genome

Contig

Total

27
15
42

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003351345.1	QQTO00000000		SAMN09702737	RCAM 04680	Bosea caraganae
GCA_003351325.1	QQTP00000000		SAMN09702738	RCAM 04685	Bosea caraganae
GCA_004123815.1	MZXT00000000		SAMN06564164	Tri-39	Bosea sp. Tri-39
GCA_004123845.1	NBDP00000000		SAMN06564167	Tri-44	Bosea sp. Tri-44
GCA_003952665.1		2	SAMN05947122	Tri-49	Bosea sp. Tri-49
GCA_004123895.1	MZXU00000000		SAMN06579178	Tri-54	Bosea sp. Tri-54
GCA_030144325.1		2	SAMN34729248	A18/4-2	Bosea vestrisii
GCA_004123905.1	MZXW00000000		SAMN06603674	Opo-243	Bradyrhizobium betae
GCA_025452235.1		2	SAMN30789408	A18/4-1	Devosia neptuniae
GCA_025452255.1		2	SAMN30789411	A8/3-2	Devosia sp. A8/3-2
GCA_024703935.1		1	SAMN23078439	B-10	Massilia sp. B-10
GCA_024703915.1		1	SAMN23078438	H-1	Massilia sp. H-1
GCA_004123915.1	MZXX00000000		SAMN06603675	Opo-242	Mesorhizobium erdmanii
GCA_014189455.1		4	SAMN14403981	583	Mesorhizobium huakuii
GCA_003722235.1	QKOD00000000		SAMN09378957	Opo-235	Mesorhizobium japonicum
GCA_003253745.1	MZXV00000000		SAMN06603672	Ach-343	Mesorhizobium kowhaii
GCA_014189435.1		3	SAMN14403980	582	Mesorhizobium loti
GCA_002741015.1		6	SAMN05413551	V5/3m	Microvirga ossetica
GCA_024703895.1		1	SAMN23078437	B-3	Nocardioides sp. B-3
GCA_003010955.1	PGGO00000000		SAMN08010942	STM 196	Phyllobacterium brassicacearum
GCA_003010935.1	PGGN00000000		SAMN08010943	PEPV15	Phyllobacterium endophyticum
GCA_003010965.1	PGGM00000000		SAMN08010944	CCBAU 03422	Phyllobacterium sophorae
GCA_014189505.1		4	SAMN14403982	628	Phyllobacterium sp. 628
GCA_025452215.1		3	SAMN30789409	A18/5-2	Phyllobacterium sp. A18/5-2
GCA_025452195.1		5	SAMN30789410	A18/3m	Phyllobacterium zundukense
GCA_002764115.1		6	SAMN05946057	Tri-48; RCAM 03910	Phyllobacterium zundukense
GCA_002763465.1	MZMT00000000		SAMN06564107	Tri-38	Phyllobacterium zundukense
GCA_024703815.1		1	SAMN23078433	P1(28)-13	Polaromonas sp. P1(28)-13
GCA_024703835.1		1	SAMN23078434	P1(28)-8	Polaromonas sp. P1(28)-8
GCA_024703875.1		2	SAMN23078436	P1-6	Polaromonas sp. P1-6
GCA_024703855.1		1	SAMN23078435	P2-4	Polaromonas sp. P2-4
GCA_004123835.1	MZMU00000000		SAMN06564165	Tri-43	Rhizobium leguminosarum
GCA_014189655.1		5	SAMN14403977	RCAM2802	Rhizobium leguminosarum bv. viciae
GCA_014189635.1		6	SAMN14403978	RCAM1365	Rhizobium leguminosarum bv. trifolii
GCA_014189575.1		5	SAMN14403974	RCAM0626	Rhizobium leguminosarum bv. viciae
GCA_014189555.1		4	SAMN14403973	RCAM0610	Rhizobium leguminosarum bv. viciae
GCA_014189535.1		5	SAMN14403983	629	Rhizobium lusitanum
GCA_016901135.1	JAFEVL000000000		SAMN17833331	Opo-234	Rhizobium lusitanum
GCA_024426085.1		6	SAMN23078440	E2-1	Rhizobium sp. RCAM05350
GCA_014189615.1		3	SAMN14403976	RCAM1750	Sinorhizobium meliloti
GCA_014189595.1		4	SAMN14403975	RCAM1115	Sinorhizobium meliloti
GCA_014189415.1		1	SAMN14403979	581	Tardiphaga robiniae

SRA Data Details

Parameter	Value
Data volume, Gbases	23
Data volume, Mbytes	19775

BioProject

Result Filters

Display Settings:

Send to:

Links from Protein

Genome sequencing and assembly of relic peas symbionts

Supplemental Content

Related information

LinkOut to external resources

Recent activity