ID 522370 - BioProject

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Accession: PRJNA522370 ID: 522370

Genomic characterization of isolates from hospital effluents in KZN, South Africa

Hospital effluent from different wards was collected. To demonstrate the phenotypic and genotypic mechanisms of antibiotic resistance using whole-genome sequencing

Accession	PRJNA522370
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 14-Feb-2019 University of KwaZulu Natal
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	97
WGS master	29
SRA Experiments	3
Protein Sequences	4408
Other datasets
BioSample	40
Assembly	29

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

18
11
29

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_019693795.1	SHCX00000000	SAMN10935822	APW500_S1	Alcaligenes faecalis
GCA_019836975.1	SRIW00000000	SAMN10935823	GFE221_S2	Alcaligenes faecalis
GCA_019836945.1	SRIV00000000	SAMN10935825	GMW315_S2	Alcaligenes faecalis
GCA_019836925.1	SRIU00000000	SAMN10935826	GPAT318_S1	Alcaligenes faecalis
GCA_019693775.1	SHCV00000000	SAMN10935829	AFE517_S1	Bacillus aerophilus
GCA_019693755.1	SHCW00000000	SAMN10935828	AFE13_S2	Bacillus aerophilus
GCA_019693725.1	SHCZ00000000	SAMN10935816	GPAT395_S2	Providencia rettgeri
GCA_019693715.1	SHCY00000000	SAMN10935819	GPAT470_S1	Providencia rettgeri
GCA_019694115.1	SHDO00000000	SAMN10935794	AFE97_S1	Providencia rettgeri
GCA_019694085.1	SHDN00000000	SAMN10935795	AFE104_S2	Providencia rettgeri
GCA_019694065.1	SHDP00000000	SAMN10935793	AFE96_S1	Providencia rettgeri
GCA_019694055.1	SHDQ00000000	SAMN10935792	AFE85_S2	Providencia rettgeri
GCA_019694035.1	SHDL00000000	SAMN10935797	AFE422_S1	Providencia rettgeri
GCA_019694015.1	SHDM00000000	SAMN10935796	AFE220_S1	Providencia rettgeri
GCA_019693985.1	SHDK00000000	SAMN10935799	AFE652_S1	Providencia rettgeri
GCA_019693965.1	SHDJ00000000	SAMN10935801	AMW342_S1	Providencia rettgeri
GCA_019693955.1	SHDI00000000	SAMN10935803	AMW697_S1	Providencia rettgeri
GCA_019693935.1	SHDH00000000	SAMN10935805	APW127_S1	Providencia rettgeri
GCA_019693905.1	SHDD00000000	SAMN10935809	GMW39_S1	Providencia rettgeri
GCA_019693895.1	SHDF00000000	SAMN10935807	APW230_S1	Providencia rettgeri
GCA_019693875.1	SHDC00000000	SAMN10935810	GMW72_S1	Providencia rettgeri
GCA_019693855.1	SHDE00000000	SAMN10935808	APW589_S1	Providencia rettgeri
GCA_019693835.1	SHDB00000000	SAMN10935812	GMW175_S1	Providencia rettgeri
GCA_019693815.1	SHDA00000000	SAMN10935815	GPAT386_S2	Providencia rettgeri
GCA_019836965.1	SRIX00000000	SAMN10935811	GMW173_S1	Providencia rettgeri
GCA_019837045.1	SRJA00000000	SAMN10935791	AFE71_S2	Providencia rettgeri
GCA_019837025.1	SRIZ00000000	SAMN10935800	AMW279_S1	Providencia rettgeri
GCA_019837005.1	SRIY00000000	SAMN10935804	AMW702_S1	Providencia rettgeri
GCA_004335985.1	SHDG00000000	SAMN10935806	APW139_S1	Providencia rettgeri

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	842

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Genomic characterization of isolates from hospital effluents in KZN, South Africa

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