Bacteroidales (ID 669351) - BioProject

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Accession: PRJNA669351 ID: 669351

Bacteroidales

Bacteroides and Parabacteroides fecal isolates from three individuals examined via PacBio sequencing and assembly

Several fecal isolates from each of three individuals are examined via PacBio sequencing and assembly for the propensity of integrative and conjugative elements (ICE) carrying Type VI secretion system (T6SS) loci to propagate or "sweep" through communities of Bacteroides and Parabacteroides co-resident in the human gut microbiota.

Accession	PRJNA669351
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	García-Bayona L et al., "Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering.", PLoS Genet, 2021 Apr;17(4):e1009541
Grants	"Contact-Dependent Antagonism in Gut Bacteroidales" (Grant ID R01 AI120633, National Institute of Allergy and Infectious Diseases Extramural Activities)
Submission	Registration date: 19-Oct-2020 Brigham & Women's Hospital
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	55
WGS master	3
Genomic DNA	52
Protein Sequences	92216
Publications
PubMed	1
PMC	1
Other datasets
BioSample	23
Assembly	23

Assembly details:

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Assembly level

Number of Assemblies

20
2
1
23

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_018292205.1		4	SAMN16451178	CL03T12C61	Bacteroides caccae CL03T12C61
GCA_018292125.1		3	SAMN16451184	CL06T03C01	Bacteroides cellulosilyticus
GCA_018289295.1		2	SAMN16451194	CL11T00C20	Bacteroides eggerthii
GCA_018292185.1		1	SAMN16451179	CL03T12C07	Bacteroides fragilis CL03T12C07
GCA_018492845.1	JAGHEG000000000		SAMN16451180	CL03T12C18	Bacteroides ovatus CL03T12C18
GCA_018292045.1		2	SAMN16451186	CL06T03C20	Bacteroides ovatus
GCA_018291945.1		1	SAMN16451187	CL06T03C19	Bacteroides salyersiae
GCA_018291825.1		1	SAMN16451188	CL06T03C18	Bacteroides thetaiotaomicron
GCA_018289275.1		3	SAMN16451195	CL11T00C24	Bacteroides thetaiotaomicron
GCA_018289175.1		4	SAMN16451196	CL11T00C07	Bacteroides uniformis
GCA_018291785.1		3	SAMN16451189	CL06T03C05	Bacteroides uniformis
GCA_018289375.1		3	SAMN16451190	CL06T06C18	Bacteroides uniformis
GCA_018292165.1		2	SAMN16451181	CL03T12C37	Bacteroides uniformis CL03T12C37
GCA_018492835.1	JAGHEF000000000		SAMN16451182	CL03T12C04	Bacteroides xylanisolvens CL03T12C04
GCA_018289135.1		4	SAMN16451198	CL11T00C03	Bacteroides xylanisolvens
GCA_018289035.1		4	SAMN16451199	CL11T00C41	Bacteroides xylanisolvens
GCA_018289335.1		3	SAMN16451192	CL06T03C10	Parabacteroides distasonis
GCA_018288975.1		2	SAMN16451200	CL11T00C22	Parabacteroides distasonis
GCA_018292145.1		1	SAMN16451183	CL03T12C09	Parabacteroides distasonis CL03T12C09
GCA_018289315.1		2	SAMN16451193	CL06T03C08	Parabacteroides merdae
GCA_018292105.1		5	SAMN16451185	CL06T03C03	Phocaeicola dorei
GCA_018289355.1		2	SAMN16451191	CL06T03C24	Phocaeicola vulgatus
GCA_018492915.1	JAGHEE000000000		SAMN16451197	CL11T00C01	Phocaeicola vulgatus

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Bacteroidales

Bacteroides and Parabacteroides fecal isolates from three individuals examined via PacBio sequencing and assembly

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