ID 697844 - BioProject

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Accession: PRJNA697844 ID: 697844

Clinical and Environmental Aspergillus fumigatus in Germany

Genome sequencing of environmental Aspergillus fumigatus isolates collected from farms in central Germany and clinical isolates submitted to the German National Reference Center for Invasive Fungal Disease.

Accession	PRJNA697844
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Barber AE et al., "Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection.", Nat Microbiol, 2021 Dec;6(12):1526-1536
Grants	"InfectControl 2020: FINAR" (Grant ID 03ZZ0809, Bundesministerium für Bildung und Forschung) "InfectControl 2020: FINAR2.0" (Grant ID 03ZZ0834, Bundesministerium für Bildung und Forschung)
Submission	Registration date: 29-Jan-2021 Leibniz-HKI
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	87539
WGS master	188
SRA Experiments	188
Protein Sequences	1772375
Publications
PubMed	1
Other datasets
BioSample	188
Assembly	188

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

12
176
188

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_020503745.1	JAIBYU000000000	SAMN17673914	A-2-48s-2	Aspergillus fumigatus
GCA_020503895.1	JAIBZA000000000	SAMN17673908	B-1-66L-1	Aspergillus fumigatus
GCA_020503885.1	JAIBYZ000000000	SAMN17673909	B-1-73L-1	Aspergillus fumigatus
GCA_020503805.1	JAIBYW000000000	SAMN17673912	D-2-44L-1	Aspergillus fumigatus
GCA_020503825.1	JAIBYY000000000	SAMN17673910	A-2-26s-2	Aspergillus fumigatus
GCA_020503815.1	JAIBYV000000000	SAMN17673913	D-2-43L-1	Aspergillus fumigatus
GCA_020503795.1	JAIBYX000000000	SAMN17673911	A-2-27s-1	Aspergillus fumigatus
GCA_020503735.1	JAIBYT000000000	SAMN17673915	A-2-47L-2	Aspergillus fumigatus
GCA_020503715.1	JAIBYR000000000	SAMN17673917	K-1-3L-2	Aspergillus fumigatus
GCA_020503705.1	JAIBYQ000000000	SAMN17673918	K-1-34L-1	Aspergillus fumigatus
GCA_020503725.1	JAIBYS000000000	SAMN17673916	A-2-47s-3	Aspergillus fumigatus
GCA_020503645.1	JAIBYO000000000	SAMN17673920	D-2-39L-2	Aspergillus fumigatus
GCA_020503635.1	JAIBYN000000000	SAMN17673921	K-1-32s-1	Aspergillus fumigatus
GCA_020503665.1	JAIBYP000000000	SAMN17673919	K-1-18L-3	Aspergillus fumigatus
GCA_020503565.1	JAIBYL000000000	SAMN17673923	K-1-8L-1	Aspergillus fumigatus
GCA_020503595.1	JAIBYM000000000	SAMN17673922	K-1-1L-5	Aspergillus fumigatus
GCA_020503545.1	JAIBYK000000000	SAMN17673924	K-1-3L-4	Aspergillus fumigatus
GCA_020503535.1	JAIBYI000000000	SAMN17673926	K-1-4s-1	Aspergillus fumigatus
GCA_020503555.1	JAIBYJ000000000	SAMN17673925	K-1-18L-6	Aspergillus fumigatus
GCA_020503515.1	JAIBYH000000000	SAMN17673927	L-2-16-1	Aspergillus fumigatus
GCA_020503465.1	JAIBYG000000000	SAMN17673928	L-2-17-1	Aspergillus fumigatus
GCA_020503295.1	JAIBXX000000000	SAMN17673937	L-2-11-4	Aspergillus fumigatus
GCA_020503455.1	JAIBYD000000000	SAMN17673931	L-2-9-1	Aspergillus fumigatus
GCA_020503445.1	JAIBYF000000000	SAMN17673929	L-2-7-2	Aspergillus fumigatus
GCA_020503435.1	JAIBYE000000000	SAMN17673930	L-2-7-1	Aspergillus fumigatus
GCA_020503395.1	JAIBYC000000000	SAMN17673932	L-2-9-5	Aspergillus fumigatus
GCA_020503345.1	JAIBXZ000000000	SAMN17673935	L-2-22-4	Aspergillus fumigatus
GCA_020503375.1	JAIBYB000000000	SAMN17673933	L-2-15-4	Aspergillus fumigatus
GCA_020503365.1	JAIBYA000000000	SAMN17673934	L-2-16-3	Aspergillus fumigatus
GCA_020503305.1	JAIBXY000000000	SAMN17673936	L-2-11-2	Aspergillus fumigatus
GCA_020503265.1	JAIBXV000000000	SAMN17673939	K-1-24L-1	Aspergillus fumigatus
GCA_020503275.1	JAIBXW000000000	SAMN17673938	F-1-10L-1	Aspergillus fumigatus
GCA_020503245.1	JAIBXU000000000	SAMN17673940	K-1-4s-1_2	Aspergillus fumigatus
GCA_020503195.1	JAIBXT000000000	SAMN17673941	K-1-12L-1	Aspergillus fumigatus
GCA_020503185.1	JAIBXR000000000	SAMN17673943	F-1-13L-1	Aspergillus fumigatus
GCA_020503175.1	JAIBXP000000000	SAMN17673945	C-1-93s-1	Aspergillus fumigatus
GCA_020503205.1	JAIBXS000000000	SAMN17673942	F-1-4L-1	Aspergillus fumigatus
GCA_020503105.1	JAIBXO000000000	SAMN17673946	F-1-13L-3	Aspergillus fumigatus
GCA_020503165.1	JAIBXQ000000000	SAMN17673944	F-1-33L-2	Aspergillus fumigatus
GCA_020503085.1	JAIBXM000000000	SAMN17673948	I-1-25-1	Aspergillus fumigatus
GCA_020503065.1	JAIBXL000000000	SAMN17673949	D-2-26s-1	Aspergillus fumigatus
GCA_020503095.1	JAIBXN000000000	SAMN17673947	F-1-3L-1	Aspergillus fumigatus
GCA_020503055.1	JAIBXK000000000	SAMN17673950	I-1-12-1	Aspergillus fumigatus
GCA_020503015.1	JAIBXJ000000000	SAMN17673951	I-1-22-5	Aspergillus fumigatus
GCA_020502985.1	JAIBXH000000000	SAMN17673953	I-1-32-2	Aspergillus fumigatus
GCA_020502995.1	JAIBXI000000000	SAMN17673952	I-1-22-4	Aspergillus fumigatus
GCA_020502725.1	JAIBXF000000000	SAMN17673955	I-1-19-2	Aspergillus fumigatus
GCA_020502875.1	JAIBXG000000000	SAMN17673954	I-1-32-1	Aspergillus fumigatus
GCA_020502715.1	JAIBXE000000000	SAMN17673956	I-1-2-4	Aspergillus fumigatus
GCA_020502675.1	JAIBXB000000000	SAMN17673959	B-1-32-3	Aspergillus fumigatus
GCA_020502705.1	JAIBXD000000000	SAMN17673957	I-1-2-2	Aspergillus fumigatus
GCA_020502695.1	JAIBXC000000000	SAMN17673958	D-2-15L-3	Aspergillus fumigatus
GCA_020502615.1	JAIBWZ000000000	SAMN17673961	B-1-30-1	Aspergillus fumigatus
GCA_020502605.1	JAIBWY000000000	SAMN17673962	C-1-31s-1	Aspergillus fumigatus
GCA_020502625.1	JAIBXA000000000	SAMN17673960	H-1-15-2	Aspergillus fumigatus
GCA_020502575.1	JAIBWW000000000	SAMN17673964	C-1-28L-1	Aspergillus fumigatus
GCA_020502595.1	JAIBWX000000000	SAMN17673963	C-1-30L-1	Aspergillus fumigatus
GCA_020502385.1	JAIBWO000000000	SAMN17673972	L-2-24-1	Aspergillus fumigatus
GCA_020502545.1	JAIBWV000000000	SAMN17673965	E-1-46-2	Aspergillus fumigatus
GCA_020502485.1	JAIBWS000000000	SAMN17673968	C-1-33L-2	Aspergillus fumigatus
GCA_020502525.1	JAIBWU000000000	SAMN17673966	E-1-37L-2	Aspergillus fumigatus
GCA_020502495.1	JAIBWT000000000	SAMN17673967	C-1-40L-2	Aspergillus fumigatus
GCA_020502455.1	JAIBWR000000000	SAMN17673969	A-2-35s-1	Aspergillus fumigatus
GCA_020503935.1	JAIBZD000000000	SAMN17673905	D-2-32L-1	Aspergillus fumigatus
GCA_020503915.1	JAIBZC000000000	SAMN17673906	C-1-76s-2	Aspergillus fumigatus
GCA_020503905.1	JAIBZB000000000	SAMN17673907	B-1-78L-1	Aspergillus fumigatus
GCA_020502435.1	JAIBWQ000000000	SAMN17673970	A-2-36s-3	Aspergillus fumigatus
GCA_020502365.1	JAIBWM000000000	SAMN17673974	L-2-21-2	Aspergillus fumigatus
GCA_020502425.1	JAIBWP000000000	SAMN17673971	A-3-43s-1	Aspergillus fumigatus
GCA_020502375.1	JAIBWN000000000	SAMN17673973	L-2-4-3	Aspergillus fumigatus
GCA_020502335.1	JAIBWL000000000	SAMN17673975	A-3-46s-1	Aspergillus fumigatus
GCA_020502325.1	JAIBWK000000000	SAMN17673976	A-3-45L-2	Aspergillus fumigatus
GCA_020502245.1	JAIBWI000000000	SAMN17673978	H-1-21-5	Aspergillus fumigatus
GCA_020502235.1	JAIBWJ000000000	SAMN17673977	A-3-40L-1	Aspergillus fumigatus
GCA_020502215.1	JAIBWG000000000	SAMN17673980	H-1-21-9	Aspergillus fumigatus
GCA_020502225.1	JAIBWH000000000	SAMN17673979	H-1-30-2	Aspergillus fumigatus
GCA_020502185.1	JAIBWF000000000	SAMN17673981	L-2-13-4	Aspergillus fumigatus
GCA_020501995.1	JAIBVV000000000	SAMN17673991	H-1-10-6	Aspergillus fumigatus
GCA_020500905.1	JAIBTT000000000	SAMN17674045	NRZ-2017-040	Aspergillus fumigatus
GCA_020500545.1	JAIBTC000000000	SAMN17674062	NRZ-2017-534	Aspergillus fumigatus
GCA_020500815.1	JAIBTP000000000	SAMN17674049	NRZ-2017-115	Aspergillus fumigatus
GCA_020500845.1	JAIBTQ000000000	SAMN17674048	NRZ-2017-096	Aspergillus fumigatus
GCA_020500805.1	JAIBTO000000000	SAMN17674050	NRZ-2017-134	Aspergillus fumigatus
GCA_020500785.1	JAIBTN000000000	SAMN17674051	NRZ-2017-195	Aspergillus fumigatus
GCA_020500605.1	JAIBTG000000000	SAMN17674058	NRZ-2017-362	Aspergillus fumigatus
GCA_020500775.1	JAIBTM000000000	SAMN17674052	NRZ-2017-214	Aspergillus fumigatus
GCA_020500765.1	JAIBTA000000000	SAMN17674064	NRZ-2015-218	Aspergillus fumigatus
GCA_020500695.1	JAIBTK000000000	SAMN17674054	NRZ-2017-282	Aspergillus fumigatus
GCA_020500705.1	JAIBTL000000000	SAMN17674053	NRZ-2014-065	Aspergillus fumigatus
GCA_020500685.1	JAIBTJ000000000	SAMN17674055	NRZ-2017-283	Aspergillus fumigatus
GCA_020500535.1	JAIBTB000000000	SAMN17674063	NRZ-2017-537	Aspergillus fumigatus
GCA_020500655.1	JAIBTI000000000	SAMN17674056	NRZ-2017-322	Aspergillus fumigatus
GCA_020500645.1	JAIBTH000000000	SAMN17674057	NRZ-2017-346	Aspergillus fumigatus
GCA_020500565.1	JAIBTE000000000	SAMN17674060	NRZ-2017-434	Aspergillus fumigatus
GCA_020500595.1	JAIBTF000000000	SAMN17674059	NRZ-2017-381	Aspergillus fumigatus
GCA_020500555.1	JAIBTD000000000	SAMN17674061	NRZ-2017-508	Aspergillus fumigatus
GCA_020500485.1	JAIBSZ000000000	SAMN17674065	NRZ-2017-546	Aspergillus fumigatus
GCA_020500445.1	JAIBSV000000000	SAMN17674069	NRZ-2018-123	Aspergillus fumigatus
GCA_020500475.1	JAIBSX000000000	SAMN17674067	NRZ-2018-097	Aspergillus fumigatus
GCA_020500235.1	JAIBSM000000000	SAMN17674078	NRZ-2018-307	Aspergillus fumigatus
GCA_020500455.1	JAIBSW000000000	SAMN17674068	NRZ-2017-101	Aspergillus fumigatus
GCA_020500465.1	JAIBSY000000000	SAMN17674066	NRZ-2018-043	Aspergillus fumigatus
GCA_020500395.1	JAIBSU000000000	SAMN17674070	NRZ-2018-146	Aspergillus fumigatus
GCA_020500355.1	JAIBSS000000000	SAMN17674072	NRZ-2018-272	Aspergillus fumigatus
GCA_020500365.1	JAIBSR000000000	SAMN17674073	NRZ-2018-281	Aspergillus fumigatus
GCA_020500385.1	JAIBST000000000	SAMN17674071	NRZ-2018-236	Aspergillus fumigatus
GCA_020500295.1	JAIBSN000000000	SAMN17674077	NRZ-2018-300	Aspergillus fumigatus
GCA_020500305.1	JAIBSQ000000000	SAMN17674074	NRZ-2018-286	Aspergillus fumigatus
GCA_020500275.1	JAIBSO000000000	SAMN17674076	NRZ-2018-290	Aspergillus fumigatus
GCA_020500285.1	JAIBSP000000000	SAMN17674075	NRZ-2016-032	Aspergillus fumigatus
GCA_020500205.1	JAIBSJ000000000	SAMN17674081	NRZ-2018-326	Aspergillus fumigatus
GCA_020500215.1	JAIBSK000000000	SAMN17674080	NRZ-2017-339	Aspergillus fumigatus
GCA_020500185.1	JAIBSL000000000	SAMN17674079	NRZ-2018-313	Aspergillus fumigatus
GCA_020499865.1	JAIBSI000000000	SAMN17674082	NRZ-2018-396	Aspergillus fumigatus
GCA_020499785.1	JAIBSE000000000	SAMN17674086	NRZ-2016-063	Aspergillus fumigatus
GCA_020499775.1	JAIBSD000000000	SAMN17674087	NRZ-2018-649	Aspergillus fumigatus
GCA_020499825.1	JAIBSH000000000	SAMN17674083	NRZ-2018-529	Aspergillus fumigatus
GCA_020499815.1	JAIBSG000000000	SAMN17674084	NRZ-2018-539	Aspergillus fumigatus
GCA_020499805.1	JAIBSF000000000	SAMN17674085	NRZ-2018-646	Aspergillus fumigatus
GCA_020499755.1	JAIBSC000000000	SAMN17674088	NRZ-2016-071	Aspergillus fumigatus
GCA_020499715.1	JAIBSB000000000	SAMN17674089	NRZ-2016-108	Aspergillus fumigatus
GCA_020499685.1	JAIBSA000000000	SAMN17674090	NRZ-2016-121	Aspergillus fumigatus
GCA_020499695.1	JAIBRY000000000	SAMN17674092	NRZ-2016-342	Aspergillus fumigatus
GCA_020499675.1	JAIBRZ000000000	SAMN17674091	NRZ-2016-141	Aspergillus fumigatus
GCA_020502165.1	JAIBWE000000000	SAMN17673982	E-1-20-2	Aspergillus fumigatus
GCA_020502125.1	JAIBWD000000000	SAMN17673983	H-1-29-2	Aspergillus fumigatus
GCA_020502115.1	JAIBWC000000000	SAMN17673984	C-1-64L-2	Aspergillus fumigatus
GCA_020502095.1	JAIBWA000000000	SAMN17673986	K-1-48s-1	Aspergillus fumigatus
GCA_020502105.1	JAIBWB000000000	SAMN17673985	K-1-1L-2	Aspergillus fumigatus
GCA_020502035.1	JAIBVY000000000	SAMN17673988	C-1-66L-2	Aspergillus fumigatus
GCA_020502005.1	JAIBVW000000000	SAMN17673990	C-1-66L-3	Aspergillus fumigatus
GCA_020502045.1	JAIBVZ000000000	SAMN17673987	K-1-8L-3	Aspergillus fumigatus
GCA_020502025.1	JAIBVX000000000	SAMN17673989	H-1-1-2	Aspergillus fumigatus
GCA_020501835.1	JAIBVN000000000	SAMN17673999	C-1-90L-1	Aspergillus fumigatus
GCA_020501985.1	JAIBVU000000000	SAMN17673992	H-1-23-3	Aspergillus fumigatus
GCA_020501905.1	JAIBVS000000000	SAMN17673994	I-1-49-3	Aspergillus fumigatus
GCA_020501895.1	JAIBVQ000000000	SAMN17673996	C-1-24L-3	Aspergillus fumigatus
GCA_020501935.1	JAIBVT000000000	SAMN17673993	I-1-48-3	Aspergillus fumigatus
GCA_020501885.1	JAIBVR000000000	SAMN17673995	F-1-14-1	Aspergillus fumigatus
GCA_020501875.1	JAIBVP000000000	SAMN17673997	H-1-26-1	Aspergillus fumigatus
GCA_020501785.1	JAIBVL000000000	SAMN17674001	G-2-1-2	Aspergillus fumigatus
GCA_020501815.1	JAIBVO000000000	SAMN17673998	G-2-22-4	Aspergillus fumigatus
GCA_020501805.1	JAIBVM000000000	SAMN17674000	G-2-6-1	Aspergillus fumigatus
GCA_020501765.1	JAIBVK000000000	SAMN17674002	G-2-14-1	Aspergillus fumigatus
GCA_020501735.1	JAIBVJ000000000	SAMN17674003	G-2-5-2	Aspergillus fumigatus
GCA_020501715.1	JAIBVH000000000	SAMN17674005	G-2-9-2	Aspergillus fumigatus
GCA_020501705.1	JAIBVI000000000	SAMN17674004	G-2-3-1	Aspergillus fumigatus
GCA_020501645.1	JAIBVF000000000	SAMN17674007	L-3-21-3	Aspergillus fumigatus
GCA_020501695.1	JAIBVG000000000	SAMN17674006	L-3-21-1	Aspergillus fumigatus
GCA_020501575.1	JAIBVB000000000	SAMN17674011	L-3-13-2	Aspergillus fumigatus
GCA_020501615.1	JAIBVD000000000	SAMN17674009	L-3-11-1	Aspergillus fumigatus
GCA_020501635.1	JAIBVE000000000	SAMN17674008	L-3-15-2	Aspergillus fumigatus
GCA_020501605.1	JAIBVC000000000	SAMN17674010	L-3-13-1	Aspergillus fumigatus
GCA_020501555.1	JAIBVA000000000	SAMN17674012	L-3-24-1	Aspergillus fumigatus
GCA_020501545.1	JAIBUZ000000000	SAMN17674013	L-3-7-1	Aspergillus fumigatus
GCA_020501535.1	JAIBUY000000000	SAMN17674014	L-3-22-2	Aspergillus fumigatus
GCA_020501465.1	JAIBUV000000000	SAMN17674017	A-2-49L-2	Aspergillus fumigatus
GCA_020501355.1	JAIBUQ000000000	SAMN17674022	C-1-94L-2	Aspergillus fumigatus
GCA_020501475.1	JAIBUX000000000	SAMN17674015	L-3-24-3	Aspergillus fumigatus
GCA_020501495.1	JAIBUW000000000	SAMN17674016	L-3-11-2	Aspergillus fumigatus
GCA_020501445.1	JAIBUU000000000	SAMN17674018	C-1-49-1	Aspergillus fumigatus
GCA_020501425.1	JAIBUT000000000	SAMN17674019	E-1-66s-1	Aspergillus fumigatus
GCA_020501325.1	JAIBUL000000000	SAMN17674027	C-1-69s-1	Aspergillus fumigatus
GCA_020501405.1	JAIBUS000000000	SAMN17674020	A-2-49L-5	Aspergillus fumigatus
GCA_020501375.1	JAIBUR000000000	SAMN17674021	C-1-67s-1	Aspergillus fumigatus
GCA_020501345.1	JAIBUP000000000	SAMN17674023	A-3-37s-1	Aspergillus fumigatus
GCA_020501335.1	JAIBUN000000000	SAMN17674025	A-3-30s-2	Aspergillus fumigatus
GCA_020501175.1	JAIBUH000000000	SAMN17674031	F-1-42-2	Aspergillus fumigatus
GCA_020501235.1	JAIBUJ000000000	SAMN17674029	A-2-34L-2	Aspergillus fumigatus
GCA_020501255.1	JAIBUO000000000	SAMN17674024	E-1-67s-1	Aspergillus fumigatus
GCA_020501265.1	JAIBUM000000000	SAMN17674026	C-1-99L-2	Aspergillus fumigatus
GCA_020501245.1	JAIBUK000000000	SAMN17674028	C-1-34s-1	Aspergillus fumigatus
GCA_020501115.1	JAIBUD000000000	SAMN17674035	F-1-39-1	Aspergillus fumigatus
GCA_020501185.1	JAIBUI000000000	SAMN17674030	D-2-47L-2	Aspergillus fumigatus
GCA_020501145.1	JAIBUG000000000	SAMN17674032	A-2-35L-1	Aspergillus fumigatus
GCA_020501135.1	JAIBUF000000000	SAMN17674033	A-2-44L-2	Aspergillus fumigatus
GCA_020501095.1	JAIBUC000000000	SAMN17674036	A-2-45L-5	Aspergillus fumigatus
GCA_020501105.1	JAIBUE000000000	SAMN17674034	D-2-49L-2	Aspergillus fumigatus
GCA_020501075.1	JAIBUB000000000	SAMN17674037	D-2-50s-1	Aspergillus fumigatus
GCA_020501045.1	JAIBUA000000000	SAMN17674038	D-2-43s-1	Aspergillus fumigatus
GCA_020500995.1	JAIBTY000000000	SAMN17674040	A-2-43L-2	Aspergillus fumigatus
GCA_020500945.1	JAIBTV000000000	SAMN17674043	D-2-15L-2	Aspergillus fumigatus
GCA_020501005.1	JAIBTZ000000000	SAMN17674039	D-2-48L-1	Aspergillus fumigatus
GCA_020500975.1	JAIBTX000000000	SAMN17674041	B-1-46-5	Aspergillus fumigatus
GCA_020500965.1	JAIBTW000000000	SAMN17674042	C-1-77s-2	Aspergillus fumigatus
GCA_020500935.1	JAIBTU000000000	SAMN17674044	NRZ-2017-039	Aspergillus fumigatus
GCA_020500875.1	JAIBTR000000000	SAMN17674047	NRZ-2017-076	Aspergillus fumigatus
GCA_020500865.1	JAIBTS000000000	SAMN17674046	NRZ-2017-069	Aspergillus fumigatus

SRA Data Details

Parameter	Value
Data volume, Gbases	306
Data volume, Tbytes	0.12

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Clinical and Environmental Aspergillus fumigatus in Germany

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