Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground truth assemblies are generated for each sample.
| Accession | PRJNA1087001 |
| Data Type | Genome sequencing and assembly, Raw sequence reads, Variation |
| Scope | Multispecies |
| Publications | - Published online: Hall M et al., "Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data", bioRxiv, 2024;
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| Submission | Registration date: 12-Mar-2024
The University of Melbourne |
| Related Resources | |
| Relevance | Basic Research |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 25 |
| SRA Experiments | 67 |
| Protein Sequences | 45891 |
| Other datasets |
| BioSample | 14 |