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Items: 1 to 20 of 31

1.

Starvation resistant cavefish reveal conserved mechanisms of starvation-induced hepatic lipotoxicity

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Regeneration and Stress Biology, IRIBHM, ULB
Accession:
PRJNA1023959
ID:
1023959

2.

Transcriptomic profile of 3D spheroids developed from Astyanax Liver-derived cells - SFL and CFL.

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Stowers Institute for Medical Research
Accession:
PRJNA980547
ID:
980547

3.

Astyanax mexicanus

Astyanax mexicanus Eye Transcriptome

Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Laboratory of Ecological and Evolutionary Genetics
Accession:
PRJNA938923
ID:
938923

4.

Astyanax mexicanus isolate:ESR-SI-001

Astyanax mexicanus isolate:ESR-SI-001 RefSeq Genome sequencing

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: RefSeq Genome sequencing
Scope:
Monoisolate
NCBI
Accession:
PRJNA853366
ID:
853366

5.

Astyanax mexicanus isolate:ESR-SI-002

Astyanax mexicanus isolate:ESR-SI-002 Genome sequencing and assembly

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
University of Missouri
Accession:
PRJNA819399
ID:
819399

6.

Astyanax mexicanus isolate:ESR-SI-003

Astyanax mexicanus isolate:ESR-SI-003 Genome sequencing and assembly

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
University of Missouri
Accession:
PRJNA819394
ID:
819394

7.

Astyanax mexicanus isolate:ESR-SI-001

Astyanax mexicanus Surface Genome sequencing

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
University of Missouri
Accession:
PRJNA807270
ID:
807270

8.

Metabolic reprogramming underlies cavefish muscular endurance despite selective loss of muscle mass and contractility

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Stowers Institute for Medical Research
Accession:
PRJNA805267
ID:
805267

9.

Liver-derived cell lines from cavefish Astyanax mexicanus as an in vitro model for studying metabolic adaptation

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Stowers Institute for Medical Research
Accession:
PRJNA802717
ID:
802717

10.

Discordant genome assemblies drastically alter the interpretation of single cell RNA sequencing data which can be mitigated by a novel integration method

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Department of Physiology, Anatomy and Genetics, University of Oxford
Accession:
PRJNA799038
ID:
799038

11.

Astyanax mexicanus

Pachon cavefish Astyanax mexicanus genome sequencing and assembly

Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
GenoFish
Accession:
PRJNA734455
ID:
734455

12.

Enhanced lipogenesis through PparĪ³ helps cavefish adapt to food scarcity

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Other
Scope:
Multiisolate
Computational Biology, Stowers Institute for Medical Research
Accession:
PRJNA725832
ID:
725832

13.

RNA-Seq Analysis of liver cells of Astyanax mexicanus.

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Seidel, Genomics, Stowers Institute
Accession:
PRJNA641515
ID:
641515

14.

Genome-wide maps of chromatin state in liver cells of Astyanax mexicanus [ChIP-seq]

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Epigenomics
Scope:
Multiisolate
Seidel, Genomics, Stowers Institute
Accession:
PRJNA641514
ID:
641514

15.

Genome-wide maps of open chromatin in liver cells of Astyanax mexicanus [ATAC-seq]

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Epigenomics
Scope:
Multiisolate
Seidel, Genomics, Stowers Institute
Accession:
PRJNA641513
ID:
641513

16.

Astyanax mexicanus

Integrative genomic analysis reveals the gene contents, repeats landscapes and evolutionary dynamics of the B chromosomes in multiple species

Project data type: Genome sequencing and assembly
Scope:
Multispecies
UNESP
Accession:
PRJNA606808
ID:
606808

17.

Comparative transcriptome analysis of wild and lab populations of Astyanax mexicanus uncovers differential effects of environment and morphotype on gene expression

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Stowers Institute for Medical Research
Accession:
PRJNA579975
ID:
579975

18.

Astyanax mexicanus breed:Surface Fish

Phenotypic Plasticity as a mechanism of cave colonization and adaptation RNAseq

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Raw sequence reads
Scope:
Multiisolate
University of Hawaii at Manoa
Accession:
PRJNA557727
ID:
557727

19.

Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Computational Biology, Stowers Institute for Medical Research
Accession:
PRJNA527091
ID:
527091

20.

An epigenetic mechanism for cavefish eye degeneration

Organism:
Astyanax mexicanus
Taxonomy:
Astyanax mexicanus (Mexican tetra)
Project data type: Other
Scope:
Multiisolate
National Institute of child health and human development
Accession:
PRJNA429434
ID:
429434

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