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8_1_RRBS-Seq

Identifiers
BioSample: SAMEA7175938; SRA: ERS4936376
Organism
Mus musculus musculus (eastern European house mouse)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
Attributes
age8
genotypewild type genotype
tissuehypothalamic arcuate nucleus
sample nameE-MTAB-9421:8_1_RRBS-Seq
sexfemale
strainC57BL/6
sub speciesmusculus
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2020-08-21T04:03:38Z
ENA-LAST-UPDATE2020-08-11T12:05:55Z
External IdSAMEA7175938
INSDC center nameShanghai Center for Systems Biomedicine, Shanghai Jiao Tong University
INSDC first public2020-08-21T04:03:38Z
INSDC last update2020-08-11T12:05:55Z
INSDC statuspublic
Submitter IdE-MTAB-9421:8_1_RRBS-Seq
broker nameArrayExpress
common nameeastern European house mouse
scientific_nameMus musculus musculus
Description

Protocols: Mice were sacrificed via cervical dislocation, and the whole brains were isolated immediately. The hypothalamic ARC tissues were obtained according to the orientation of 0.4 mm lateral, 1.60 mm posterior to bregma, 7.40 mm below the surface of the dura Genomic DNA of ARC in two groups were extracted using the QIAquick Gel Extraction Kit (Qiagen, Hilden, Germany). The 200 ng high-quality DNA was then digested by restriction endonucleases MspI (NEB) and subjected to 3′-end blunting and single nucleotide (A) addition and adaptor ligation. For RRHP, 5hmC positions at the adapter junctions were modified by T4 phage β-glucosyltransferase (NEB), and non glucosyl-5hmCs were removed by another round of MspI digestion. The 250-500 bp fragments were then selected and treated with bisulfite conversion using Epitect Bisulfite Kit (Qiagen) according to the manufacturer’s instructions.

BioProject
PRJEB39815 Transcriptome and DNA (hydro)methylation in mouse hypothalamic arcuate nucleus in puberty onset
Retrieve all samples from this project

Submission
EBI; 2020-08-22
Accession:
SAMEA7175938
ID:
15881007

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