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CDC Sars CoV2 Sequencing Baseline Constellation

Identifiers
BioSample: SAMN41241953; SRA: SRS21239757; CDC-OAMD: SARS-CoV-2/Human/USA/NM-CDC-LC1103743/2024
Organism
Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus
Package
SARS-CoV-2: clinical or host-associated; version 1.0
Attributes
isolateSARS-CoV-2/Human/USA/NM-CDC-LC1103743/2024
collected byLaboratory Corporation of America
collection date2024-04-18
isolation sourceNasal Swabs
geographic locationUSA: New Mexico
hostHomo sapiens
host diseaseCOVID-19
host sexfemale
host age90
collection deviceNasal Swabs
collection method Nasal Swabs
purpose of sequencingbaseline surveillance (random sampling)
host_raceUnknown
diagnostic_gene_name_1N1 gene
diagnostic_pcr_protocol_1Labcorp LDT
diagnostic_pcr_Ct_value_119.855
diagnostic_gene_name_2N2 gene
diagnostic_pcr_protocol_2Labcorp LDT
diagnostic_pcr_Ct_value_218.27
diagnostic_gene_name_3RP gene
diagnostic_pcr_protocol_3Labcorp LDT
diagnostic_pcr_Ct_value_322.644
lineage/clade nameJN.1.4
Submission
CDC-OAMD; 2024-05-07
Accession:
SAMN41241953
ID:
41241953

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