Rat2.Day.100

Organism: Rattus norvegicus albus
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus; Rattus norvegicus

Attributes

body habitat	UBERON:intestinal mucosa
collection date	2014-06-10
broad-scale environmental context	animal-associated habitat
local-scale environmental context	ENVO:animal-associated habitat
environmental medium	Intestinal
geographic location	Czech Republic
host taxonomy ID	947987 (947987)
investigation type	metagenome
project name	Commensal helminth alters host immune system and the gut microbiota in a rat model system
sample name	Rat2.Day.100
sex	female
treatment	Hymenolepis_infection
sub species	albus
ENA first public	2016-05-17
ENA last update	2016-10-21
ENA-CHECKLIST	ERC000013
External Id	SAMEA3910151
INSDC center alias	UNIVERSITY OF BRITISH COLUMBIA
INSDC center name	UNIVERSITY OF BRITISH COLUMBIA
INSDC first public	2016-05-17T17:01:24Z
INSDC last update	2016-10-21T09:40:10Z
INSDC status	public
Submitter Id	Rat2.Day.100
collection_type	Intestinal
experimental day	100
geographic location (latitude)	48.978246
geographic location (longitude)	14.446492
host-associated environmental package	host-associated
host_genus	Rattus
multiplex identifiers	CGTTCCTTGTTA
rat_individual	2
sequencing method	MiSeq
target gene	16s rRNA
target subfragment	V4
time period	patent

BioProject: PRJEB13095 Rat Gut Ribosomal Sequences
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BioSample