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Metagenome-assembled genome: SRR11489747_bin.70_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110411706; SRA: ERS12510061
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; environmental samples
Attributes
broad-scale environmental contextPig digestive system
collection date2017-03-05
environmental mediumGut content
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameFind the difference of gut microbial community structure and function diversity under LDA exposure
sample nameSRR11489747_bin.70_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-25
ENA-LAST-UPDATE2022-07-25
External IdSAMEA110411706
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-25T20:32:46Z
INSDC last update2022-07-25T20:32:46Z
INSDC statuspublic
Submitter IdSRR11489747_bin.70_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score90.54
completeness softwareCheckM
contamination score1.76
geographic location (latitude)30.3
geographic location (longitude)103.0
local environmental contextIntestine
metagenomic sourcepig gut metagenome
sample derived fromSAMN14543216
sequencing methodIllumina HiSeq 3000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11489747 of study SRP118553.

BioProject
PRJEB53600
Retrieve all samples from this project

Submission
EBI; 2022-07-26
Accession:
SAMEA110411706
ID:
29972150

BioProject Nucleotide

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