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Metagenome-assembled genome: ERR4836928_bin.17_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA110703338; SRA: ERS12800875
Organism
uncultured Clostridium sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-10-14
environmental mediumCecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- Prior Chicken
sample nameERR4836928_bin.17_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22T12:23:01Z
ENA-LAST-UPDATE2023-03-22T12:23:01Z
External IdSAMEA110703338
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:23:01Z
INSDC last update2023-03-22T12:23:01Z
INSDC statuspublic
Submitter IdERR4836928_bin.17_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.14
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score79.06
completeness softwareCheckM
contamination score0.67
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA14099425
scientific_nameuncultured Clostridium sp.
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4836928 of study ERP125074.

BioProject
PRJEB55374 HoloFood Chicken Caecum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA110703338
ID:
33882049

BioProject Nucleotide

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