Metagenome-assembled genome: ERR6769635_bin.7_Meta... - BioSample

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Result Filters

Metagenome-assembled genome: ERR6769635_bin.7_MetaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA110745256; SRA: ERS12842781

Organism: Campylobacter jejuni
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Attributes

broad-scale environmental context	Chicken digestive system
collection date	2019-10-16
environmental medium	Ileum
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	chicken gut metagenome
project name	HoloFood Chicken -- Prior Chicken Illeum
sample name	ERR6769635_bin.7_MetaWRAP_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-22
ENA-LAST-UPDATE	2023-03-22
External Id	SAMEA110745256
INSDC center alias	UNIVERSITY OF COPENHAGEN
INSDC center name	UNIVERSITY OF COPENHAGEN
INSDC first public	2023-03-22T12:23:03Z
INSDC last update	2023-03-22T12:23:03Z
INSDC status	public
Submitter Id	ERR6769635_bin.7_MetaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.14
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.55
completeness software	CheckM
contamination score	0.04
geographic location (latitude)	41.170048
geographic location (longitude)	1.168491
local environmental context	Digestive tube
metagenomic source	chicken gut metagenome
sample derived from	SAMEA10130113
scientific_name	Campylobacter jejuni
sequencing method	DNBSEQ-G400
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni
taxonomic identity marker	multi-marker approach