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Metagenome-assembled genome: ERR4304450_ERR4303136_ERR4303150_bin.29_MetaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA111535109; SRA: ERS13645142
Organism
uncultured Clostridium sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples
Attributes
broad-scale environmental contextChicken digestive system
collection datenot provided
environmental mediumCaecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- MAG Catalogue data
sample nameERR4304450_ERR4303136_ERR4303150_bin.29_MetaWRAP_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA111535109
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:23:12Z
INSDC last update2023-03-22T12:23:12Z
INSDC statuspublic
Submitter IdERR4304450_ERR4303136_ERR4303150_bin.29_MetaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT_v1.2.9
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score76.66
completeness softwareCheckM
contamination score1.4
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7025263,SAMEA7025284,SAMEA7025243
scientific_nameuncultured Clostridium sp.
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-Assembled Genome (MAG) assembled from the metagenomic runs ERR4304450,ERR4303136,ERR4303150 of study ERP122587.

BioProject
PRJEB55374 HoloFood Chicken Caecum MAG catalogue
Retrieve all samples from this project

Submission
EBI; 2023-03-24
Accession:
SAMEA111535109
ID:
33882465

BioProject Nucleotide

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