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Metagenome-assembled genome: dsm_us_coassembly__bin117

Identifiers
BioSample: SAMEA112285571; SRA: ERS14396417
Organism
uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples
Attributes
broad-scale environmental contexthost-associated habitat
collection date2016
environmental mediumcaecal content
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameDSM US
sample namedsm_us_coassembly__bin117
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA112285571
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2023-01-03T16:28:38Z
INSDC last update2023-01-03T16:28:38Z
INSDC statuspublic
Submitter Iddsm_us_coassembly__bin117
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.4
binning parametersdefault parameters
binning softwareSemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3
completeness score87.39
completeness softwarecheckm2 v0.1.3
contamination score0.43
geographic location (latitude)39.768403
geographic location (longitude)-86.158068
geographic location (region and locality)Middle West
local environmental contexthost-associated habitat
metagenomic sourcechicken gut metagenome
sample derived fromERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171
scientific_nameuncultured Lachnospiraceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

BioProject
PRJEB53667
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA112285571
ID:
32570592

BioProject Nucleotide

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