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Metagenome-Assembled Genome: ERR10960944_bin.18_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114061548; SRA: ERS16045414
Organism
uncultured Collinsella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2018
environmental mediumfaeces
geographic locationKenya
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameShotgun metagenomics from Kenyan infants
sample nameERR10960944_bin.18_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:55Z
ENA-LAST-UPDATE2023-07-13T16:22:55Z
External IdSAMEA114061548
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:55Z
INSDC last update2023-07-13T16:22:55Z
INSDC statuspublic
Submitter IdERR10960944_bin.18_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score53.45
completeness softwareCheckM
contamination score1.72
geographic location (latitude)-0.023636
geographic location (longitude)37.910405
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA112710991
scientific_nameuncultured Collinsella sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10960944 of study ERP137488.

BioProject
PRJEB62839
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114061548
ID:
36477641

BioProject Nucleotide

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