This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Lachnospiraceae bacterium GAM79
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae

Attributes

broad-scale environmental context	hominid body
collection date	2012/2013
environmental medium	feces
geographic location	Denmark
investigation type	metagenome-assembled genome
isolation source	Feces of Homo sapiens (DK)
sample name	E07160-L1_cleanbin_000033
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:19Z
ENA-LAST-UPDATE	2023-11-07T00:47:19Z
External Id	SAMEA114581660
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:19Z
INSDC last update	2023-11-07T00:47:19Z
INSDC status	public
Submitter Id	E07160-L1_cleanbin_000033
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	99.16666667
completeness software	MAGSCoT
contamination score	5.833333333
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Human gut
sample derived from	SAMN10093281
scientific_name	Lachnospiraceae bacterium GAM79
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets