This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Alphaproteobacteria bacterium UBA6324
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; unclassified Alphaproteobacteria

Attributes

broad-scale environmental context	hominid body
collection date	2004/2008
environmental medium	feces
geographic location	Uganda
investigation type	metagenome-assembled genome
isolation source	Feces of Pan troglodytes schweinfurthii
sample name	G02613-L1_cleanbin_000014
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:26Z
ENA-LAST-UPDATE	2023-11-07T00:47:26Z
External Id	SAMEA114582539
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:26Z
INSDC last update	2023-11-07T00:47:26Z
INSDC status	public
Submitter Id	G02613-L1_cleanbin_000014
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	99.17
completeness software	MAGSCoT
contamination score	5
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Pan troglodytes gut
sample derived from	SAMN17312199
scientific_name	Alphaproteobacteria bacterium UBA6324
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets