This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Lachnospiraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae

Attributes

broad-scale environmental context	hominid body
collection date	2004/2008
environmental medium	feces
geographic location	Uganda
investigation type	metagenome-assembled genome
isolation source	Feces of Pan troglodytes schweinfurthii
sample name	G02619-L1_cleanbin_000013
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:16Z
ENA-LAST-UPDATE	2023-11-07T00:47:16Z
External Id	SAMEA114582726
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:16Z
INSDC last update	2023-11-07T00:47:16Z
INSDC status	public
Submitter Id	G02619-L1_cleanbin_000013
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	84.17
completeness software	MAGSCoT
contamination score	1.67
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Pan troglodytes gut
sample derived from	SAMN17312202
scientific_name	Lachnospiraceae bacterium
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets

BioProject: PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

This sample represents a MAG derived from the metagenomic sample SAMN17312202
This sample represents a MAG derived from the metagenomic sample SAMN17312202

biosample
Bacteroidaceae bacterium isolate SID5429-1_cleanbin_000028, whole genome shotgun...
Bacteroidaceae bacterium isolate SID5429-1_cleanbin_000028, whole genome shotgun sequencing project
gi|2631161220|emb|CAVCBN000000000.1 BN010000000

Nucleotide

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