This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Treponemataceae bacterium
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; unclassified Treponemataceae

Attributes

broad-scale environmental context	hominid body
collection date	2001/2014
environmental medium	feces
geographic location	Cote d'Ivoire
investigation type	metagenome-assembled genome
isolation source	Feces of Pan troglodytes verus
sample name	G02645-L1_cleanbin_000049
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:46:58Z
ENA-LAST-UPDATE	2023-11-07T00:46:58Z
External Id	SAMEA114583695
INSDC center name	ICMB
INSDC first public	2023-11-07T00:46:58Z
INSDC last update	2023-11-07T00:46:58Z
INSDC status	public
Submitter Id	G02645-L1_cleanbin_000049
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	88.33
completeness software	MAGSCoT
contamination score	1.67
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Pan troglodytes gut
sample derived from	SAMN17312225
scientific_name	Treponemataceae bacterium
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets